DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and iglon5

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_002938252.1 Gene:iglon5 / 100488314 XenbaseID:XB-GENE-945713 Length:333 Species:Xenopus tropicalis


Alignment Length:265 Identity:66/265 - (24%)
Similarity:112/265 - (42%) Gaps:52/265 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   472 WLLDSQPIMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNV 536
            |.:||:..:..:....::|         ||:|::::     |.|||.|  |.......|::::  
 Frog    73 WSIDSRVQLLTNTKSEYSI---------VITHVDVA-----DEGLYTC--SFQTEDKPHTSQV-- 119

  Fly   537 YGPPYVRAIGPIKAV---------AGEDIIVHCPFAGYPVEQIRWEKAHQELTTSNHYELASVAD 592
                |:....|.|.|         .|.::.:.|...|.|...|.|::..:..::.          
 Frog   120 ----YLIVQVPAKIVNISSSVTVNEGSNVNLQCLAVGKPEPTITWQQLSEGFSSE---------- 170

  Fly   593 GGQLVIKNVEPGRDQ-GIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQE--GGRAQIT 654
             |:| ::..|..|.| |.|.|:..:.......:.:|:.||.||.|...   ||.|.  |..|.:.
 Frog   171 -GEL-LEITEINRQQAGDYECVTSNGVSVPDTKKVQITVNYPPYITDV---KNAQSPVGRPATLR 230

  Fly   655 CAVSSGDMPIYFSWKKDDSS--IPSSLQITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVN 717
            |...:.. |..|.|.||:..  |..:..::.|.|..:|::||.::::||.|.|||.|||.....|
 Frog   231 CKAMAVP-PAEFEWYKDEKRRLISGTEGLSIKTESSWSVIVFSNVTSRHYGNYTCLASNKLGSFN 294

  Fly   718 YTAEL 722
            .:..|
 Frog   295 SSLRL 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165 14/60 (23%)
IGc2 553..619 CDD:197706 14/66 (21%)
I-set 634..724 CDD:254352 30/93 (32%)
ig 645..712 CDD:278476 23/70 (33%)
IG_like 734..815 CDD:214653
Ig 745..815 CDD:299845
I-set 820..913 CDD:254352
Ig 838..920 CDD:299845
FN3 917..1033 CDD:238020
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
iglon5XP_002938252.1 Ig 31..123 CDD:299845 15/71 (21%)
IG_like 35..123 CDD:214653 15/71 (21%)
Ig 126..207 CDD:299845 18/92 (20%)
I-set 128..207 CDD:254352 17/90 (19%)
I-set 210..299 CDD:254352 30/92 (33%)
Ig 227..298 CDD:143165 23/71 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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