DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and LOC100331810

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_002660992.3 Gene:LOC100331810 / 100331810 -ID:- Length:264 Species:Danio rerio


Alignment Length:226 Identity:50/226 - (22%)
Similarity:80/226 - (35%) Gaps:56/226 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   548 IKAVAGEDIIVHCPFAGYPVEQIRWEKAHQELTTSNHY--------------ELASVAD-GGQLV 597
            |:..:|...|:.||:.    ||.   |.||:.....::              :..|:.| ..|.|
Zfish    25 IRVKSGSPGIIPCPYE----EQY---KEHQKFWCQGYFWSTCNLLAFGNETGKNFSITDYPAQSV 82

  Fly   598 I----KNVEPGRDQGIYTCIVRSRAGEEARRD----MQLNVNSPPVIEPFKFPKNLQEGGRAQIT 654
            .    :|::|. |.|.|.|.|  ..|.....|    :.|.|.|.|.:.......:..|||...:.
Zfish    83 FTVEWQNLQPS-DSGHYWCAV--EIGGPGTLDAGYYVYLTVQSAPDVSVMSSSVSGHEGGNVSVQ 144

  Fly   655 CAVSSGDMPIYFSW-----------KKDDSSIPSSLQITEKKEEFYSLLVFKDISARHSGKYTCY 708
            |..||........|           ::.|:|..||:||::..|..:::|: ..:....||.|...
Zfish   145 CFYSSRYKAYNKQWCRVKDKSCYAVERSDTSQSSSVQISDDGESSFTVLM-TGLRLSDSGWYFGS 208

  Fly   709 ASNAAAKVN-----------YTAELQVRVAP 728
            ..|....|.           ||.:...::.|
Zfish   209 VGNLQVPVQLTVTKPEHKDLYTTQPSAKLIP 239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165
IGc2 553..619 CDD:197706 20/84 (24%)
I-set 634..724 CDD:254352 23/111 (21%)
ig 645..712 CDD:278476 18/77 (23%)
IG_like 734..815 CDD:214653
Ig 745..815 CDD:299845
I-set 820..913 CDD:254352
Ig 838..920 CDD:299845
FN3 917..1033 CDD:238020
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
LOC100331810XP_002660992.3 IG_like 23..120 CDD:214653 24/104 (23%)
Ig 35..106 CDD:299845 18/80 (23%)
Ig 135..>205 CDD:299845 17/70 (24%)
IG_like 137..220 CDD:214653 20/83 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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