DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and kirrel1b

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_017212964.1 Gene:kirrel1b / 100170816 ZFINID:ZDB-GENE-070912-173 Length:801 Species:Danio rerio


Alignment Length:741 Identity:167/741 - (22%)
Similarity:266/741 - (35%) Gaps:196/741 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   405 QNVGRRDRGVYQCLVENQRASAQAMAELKLGDTVPELIYTFIEQNVRPGPLISLKCSASGSPPPQ 469
            |:|...:|.|..|:|.|                     ||.|.|..:.|  ::|.........|:
Zfish    34 QSVVIGERVVLSCVVFN---------------------YTGIVQWTKDG--LALGIGEDLRAWPR 75

  Fly   470 FAWLLDSQPIMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARL 534
            :..|    .||||        ||:         :|.|:.....|..||:|.|:.: ......|:|
Zfish    76 YRVL----RIMDV--------GQY---------NLEITSADLTDDSLYECQATEA-ALRSRRAKL 118

  Fly   535 NVYGP---PYVRAIGPIKAVAGEDIIVHCPFAG-YPVEQIRW-------EKAH---------QEL 579
            .|..|   |.:.....|...||....:.|...| .|:..|.|       |.||         :.:
Zfish   119 TVLIPPDGPVIEGSPEILLTAGTSFNLTCVSRGAKPMSTIEWYKDGIIVEGAHTSTEVLSDRKRV 183

  Fly   580 TTSNHYELASVADGGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRD-MQLNVNSPPVIEPFKFPK 643
            ||.:..|:..:         :.:.||:   :||:..:.|....:|. :.||::.||.:.....|:
Zfish   184 TTKSFLEIQPM---------DTDTGRN---FTCVASNLAAPLGKRSTVTLNIHHPPTVILSIEPR 236

  Fly   644 NLQEGGRAQITCAVSSGDMPIYFSWKKDDSSIPSSLQITEKKEEFYSLLVFKDISARHS---GKY 705
            ::.||.|.:.||..::....:.:.|.|      ..:.:...:|..:      :.:|.||   ...
Zfish   237 SVLEGERVKFTCQATANPPIMGYRWAK------GGVILDGARESVF------ETTADHSFFTEPV 289

  Fly   706 TCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAIMLGNTISINCEAEGYPIPTITWFKGQGKGSK 770
            :|...||....|.:..:.|...|....||....:.:.:.:::||:..|.|..|:||.|   ||| 
Zfish   290 SCLVFNAVGSTNVSILVDVHFGPILVVEPRPVTVDVDSDVTLNCKWSGNPPLTLTWTK---KGS- 350

  Fly   771 DFKPLSM---RNHSLLLNLATDNDEGYYMCQA-TNEIGAGLKKTIRINVNEPARFEQSARNISSR 831
                 ||   .::.|.|...:..|.|.|:|:| ...||.| :..:.:.||.|.       .|||.
Zfish   351 -----SMVLSNSNQLFLKSVSQADAGQYVCKAIVPRIGVG-ETEVTLTVNGPP-------IISSE 402

  Fly   832 ------RNDPVTLDCHAKGDEP---ITIGWTQN-----NGRIDLNNFRFSIAEMKTEKG-VDSQL 881
                  |.:...:.|:.....|   |...|.:|     .|.: |..:....:...|:.| |.|.|
Zfish   403 PIQYAVRGEKGEIKCYIASTPPPDKIVWAWKENVWEKERGTL-LERYTVEQSRPATQGGAVLSTL 466

  Fly   882 TIGHSDRHD-SGVYRCIAENPYGRAEQIIFLAVQERPDTPSHLEIFEVG---SRTVKLSWRRPFD 942
            ||.:....| ...|.|.|.|.:|....||.|   |..|..|. :|..||   ..:|         
Zfish   467 TINNVMEADFQSTYNCTAWNAFGPGTMIITL---EETDIASE-DIVPVGVIAGGSV--------- 518

  Fly   943 GNSPVLSYLVQYQALKYLQSHGSLAAAG----GDWNGHVINVS---------------------- 981
             .|.:|..|:.:..:.||......:..|    .|.....:|..                      
Zfish   519 -GSSILLLLLLFALIFYLYRQRKSSRRGVTLKPDIKVETVNKETNLEEEAASASTATRMVKAMYS 582

  Fly   982 -LPSTSISRSY-----DSDLRESAIVAGLTPATT-----------FLIRMQAINEIERSAYTEAI 1029
             |||.|:|.|.     |.||::......|.|...           :.:|....:|:..|..:   
Zfish   583 FLPSVSLSPSTQPFKDDMDLKQDLQTETLEPKVEEYEAKDPTNGYYNVRATTHDEVRSSTRS--- 644

  Fly  1030 VLKTQEEAPTEAPSNVQVQTGGESEL 1055
            :|..:..||.  |::|...|||.:.:
Zfish   645 LLYQEFRAPN--PASVSASTGGPANI 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352 7/27 (26%)
Ig 358..431 CDD:143165 7/25 (28%)
Ig 456..533 CDD:143165 16/76 (21%)
IGc2 553..619 CDD:197706 16/82 (20%)
I-set 634..724 CDD:254352 17/92 (18%)
ig 645..712 CDD:278476 12/69 (17%)
IG_like 734..815 CDD:214653 24/84 (29%)
Ig 745..815 CDD:299845 23/73 (32%)
I-set 820..913 CDD:254352 27/108 (25%)
Ig 838..920 CDD:299845 25/91 (27%)
FN3 917..1033 CDD:238020 29/161 (18%)
FN3 1040..1142 CDD:238020 5/16 (31%)
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
kirrel1bXP_017212964.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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