DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5863 and Ctsd

DIOPT Version :9

Sequence 1:NP_650623.1 Gene:CG5863 / 42096 FlyBaseID:FBgn0038507 Length:395 Species:Drosophila melanogaster
Sequence 2:NP_599161.2 Gene:Ctsd / 171293 RGDID:621511 Length:407 Species:Rattus norvegicus


Alignment Length:406 Identity:166/406 - (40%)
Similarity:231/406 - (56%) Gaps:29/406 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LWILCLFWAKCQGQLIRIPMQFQASFMASRRQHRAGRSSL--------LAKYNVVGGQEVTSRNG 67
            |.||.|. |.....|||||::   .|.:.||.......|:        :.||::   |.......
  Rat     8 LLILGLL-AASSSALIRIPLR---KFTSIRRTMTEVGGSVEDLILKGPITKYSM---QSSPRTKE 65

  Fly    68 GATETLDNRLNLEYAGPISIGSPGQPFNMLFDTGSANLWVPSAECSPKSVACHHHHRYNASASST 132
            ..:|.|.|.|:.:|.|.|.||:|.|.|.::|||||:||||||..|....:||..||:||:..|||
  Rat    66 PVSELLKNYLDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWVHHKYNSDKSST 130

  Fly   133 FVPDGRRFSIAYGTGSLSGRLAQDTVAI------GQLVVQNQTFGMATHEPGPTFVDTNFAGIVG 191
            :|.:|..|.|.||:|||||.|:||||::      |.:.|:.|.||.||.:||..|:...|.||:|
  Rat   131 YVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDLGGIKVEKQIFGEATKQPGVVFIAAKFDGILG 195

  Fly   192 LGFRPIAELGIKPLFESMCDQQLVDECVFSFYLKRNGSERKGGELLFGGVDKTKFSGSLTYVPLT 256
            :|:..|:...:.|:|:::..|:||::.:|||||.|:.:.:.||||:.||.|...:.|.|:|:.:|
  Rat   196 MGYPFISVNNVLPVFDNLMKQKLVEKNIFSFYLNRDPTGQPGGELMLGGTDSRYYHGELSYLNVT 260

  Fly   257 HAGYWQFPLDVIEVAG--TRINQNRQAIADTGTSLLAAPPREYLIINSLLGGLPTSNNEYLLNCS 319
            ...|||..:|.:||..  |......:||.|||||||..|..|...:...:|.:|....||::.|.
  Rat   261 RKAYWQVHMDQLEVGSELTLCKGGCEAIVDTGTSLLVGPVDEVKELQKAIGAVPLIQGEYMIPCE 325

  Fly   320 EIDSLPEIVFIIGGQRFGLQPRDYVMSATNDDGSSICLSAFTLMD-----AEFWILGDVFIGRYY 379
            ::.|||.|.|.:|||.:.|.|..|::. .:..|.:||||.|..||     ...|||||||||.||
  Rat   326 KVSSLPIITFKLGGQNYELHPEKYILK-VSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYY 389

  Fly   380 TAFDAGQRRIGFAPAA 395
            |.||....|:|||.||
  Rat   390 TVFDREYNRVGFAKAA 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5863NP_650623.1 pepsin_retropepsin_like 71..392 CDD:299705 145/333 (44%)
Asp 80..394 CDD:278455 143/326 (44%)
CtsdNP_599161.2 A1_Propeptide 21..46 CDD:285240 9/27 (33%)
Cathepsin_D2 73..403 CDD:133157 144/330 (44%)
Asp 78..404 CDD:278455 143/326 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1339
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54317
OrthoDB 1 1.010 - - D1619495at2759
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100536
Panther 1 1.100 - - O PTHR47966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.830

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