DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5860 and Napsa

DIOPT Version :9

Sequence 1:NP_650622.1 Gene:CG5860 / 42095 FlyBaseID:FBgn0038506 Length:370 Species:Drosophila melanogaster
Sequence 2:NP_113858.1 Gene:Napsa / 60575 RGDID:61940 Length:420 Species:Rattus norvegicus


Alignment Length:399 Identity:144/399 - (36%)
Similarity:207/399 - (51%) Gaps:35/399 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLRVLCFLLAFLSLVFATQKILKVPLYVRRSFNESEVF-----------LARSATEGGETLQLQL 54
            :|.:||.:|  |..:.....:::|||  ||......:|           |:|:.|.||:|..:. 
  Rat     6 LLLLLCLVL--LGNLEPAATLIRVPL--RRIHPGHRIFSPLYGWEQRAELSRTPTSGGKTAFVP- 65

  Fly    55 LLQTHNNMEYYGTIAMGNPRQNFTVIFDTGSSNTWLPSVNCPMSNSACQNHRKYNSSRSSSYIPD 119
             |....|.:|:|.|.:|.|.|||||:|||||||.|:||..|...:.||..|.::|...|||:.|:
  Rat    66 -LSKFMNTQYFGDIGLGTPPQNFTVVFDTGSSNLWVPSTRCHFFSLACWFHHRFNPKASSSFRPN 129

  Fly   120 GRNFTLRYGSGMVVGYLSKDTMHIAGAELPHFTFGESLFLQHFAFSSVKFDGLVGLGLGVLSWSN 184
            |..|.::||:|.:.|.||:|.:.|.|......||||:|:.....|:..:|||::|||...|:...
  Rat   130 GTKFAIQYGTGRLSGILSRDNLTIGGIHNVSVTFGEALWEPSLVFALARFDGILGLGFPTLAVGG 194

  Fly   185 TTPFLELLCAQRLLEKCVFSVYLRRDPR-----EIVFGGFDESKFEGKLHYVPVSQWHTWSLQIS 244
            ..|.|:.|..||||||.|||.||.||..     |:|.||.|...:...|.::||:....|.:.:.
  Rat   195 VQPPLDALVEQRLLEKPVFSFYLNRDSEGSDGGELVLGGSDPDHYVPPLTFIPVTIPAYWQVHMQ 259

  Fly   245 KSSVGT--KQIGGKSNAILDTGTSLVLVPQQTYHNLLNTLSA-KLQNGYFVVAC-KSGSLPNINI 305
            ...|||  ........|||||||||:..|.:....|...:.. .|..|.:::.| |...||.::.
  Rat   260 SVKVGTGLNLCAQGCGAILDTGTSLITGPSEEIRALNKAVGGFPLLTGQYLIQCSKIPELPTVSF 324

  Fly   306 LIGDKVFPLTSSDYIMEVLLDRKPACVLAI----APINRG-FWVLGDIFLRRYYTVFDATEK--- 362
            .:|...|.||..||::::|......|:|..    .|...| .|:|||:||..|..|||..:|   
  Rat   325 SLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPEGPLWILGDVFLGSYVAVFDRGDKNIG 389

  Fly   363 -RIGLAKAK 370
             |:|||:|:
  Rat   390 PRVGLARAR 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5860NP_650622.1 pepsin_retropepsin_like 61..368 CDD:299705 124/324 (38%)
Asp 63..369 CDD:278455 124/323 (38%)
NapsaNP_113858.1 pepsin_retropepsin_like 69..395 CDD:299705 123/325 (38%)
Asp 73..397 CDD:278455 124/323 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1339
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1619495at2759
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.880

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