DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5860 and Ctsd

DIOPT Version :9

Sequence 1:NP_650622.1 Gene:CG5860 / 42095 FlyBaseID:FBgn0038506 Length:370 Species:Drosophila melanogaster
Sequence 2:NP_599161.2 Gene:Ctsd / 171293 RGDID:621511 Length:407 Species:Rattus norvegicus


Alignment Length:405 Identity:143/405 - (35%)
Similarity:216/405 - (53%) Gaps:50/405 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLAFLSLVFATQK-ILKVPLYVRRSFNESEVFLARSATE-GGETLQLQL---------------- 54
            ||..|.|:.|:.. ::::||   |.|..    :.|:.|| ||....|.|                
  Rat     7 LLLILGLLAASSSALIRIPL---RKFTS----IRRTMTEVGGSVEDLILKGPITKYSMQSSPRTK 64

  Fly    55 -----LLQTHNNMEYYGTIAMGNPRQNFTVIFDTGSSNTWLPSVNCPMSNSACQNHRKYNSSRSS 114
                 ||:.:.:.:|||.|.:|.|.|.|||:|||||||.|:||::|.:.:.||..|.||||.:||
  Rat    65 EPVSELLKNYLDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWVHHKYNSDKSS 129

  Fly   115 SYIPDGRNFTLRYGSGMVVGYLSKDTMHI------AGAELPHFTFGESLFLQHFAFSSVKFDGLV 173
            :|:.:|.:|.:.||||.:.||||:||:.:      .|.::....|||:.......|.:.||||::
  Rat   130 TYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDLGGIKVEKQIFGEATKQPGVVFIAAKFDGIL 194

  Fly   174 GLGLGVLSWSNTTPFLELLCAQRLLEKCVFSVYLRRDPR-----EIVFGGFDESKFEGKLHYVPV 233
            |:|...:|.:|..|..:.|..|:|:||.:||.||.|||.     |::.||.|...:.|:|.|:.|
  Rat   195 GMGYPFISVNNVLPVFDNLMKQKLVEKNIFSFYLNRDPTGQPGGELMLGGTDSRYYHGELSYLNV 259

  Fly   234 SQWHTWSLQISKSSVGTK--QIGGKSNAILDTGTSLVLVPQQTYHNLLNTLSA-KLQNGYFVVAC 295
            ::...|.:.:.:..||::  ...|...||:||||||::.|......|...:.| .|..|.:::.|
  Rat   260 TRKAYWQVHMDQLEVGSELTLCKGGCEAIVDTGTSLLVGPVDEVKELQKAIGAVPLIQGEYMIPC 324

  Fly   296 -KSGSLPNINILIGDKVFPLTSSDYIMEVLLDRKPACV-----LAIAPINRGFWVLGDIFLRRYY 354
             |..|||.|...:|.:.:.|....||::|....|..|:     :.|.|.:...|:|||:|:..||
  Rat   325 EKVSSLPIITFKLGGQNYELHPEKYILKVSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYY 389

  Fly   355 TVFDATEKRIGLAKA 369
            ||||....|:|.|||
  Rat   390 TVFDREYNRVGFAKA 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5860NP_650622.1 pepsin_retropepsin_like 61..368 CDD:299705 122/326 (37%)
Asp 63..369 CDD:278455 123/325 (38%)
CtsdNP_599161.2 A1_Propeptide 21..46 CDD:285240 9/31 (29%)
Cathepsin_D2 73..403 CDD:133157 122/329 (37%)
Asp 78..404 CDD:278455 123/325 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1339
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1619495at2759
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.920

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