DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17283 and Cym

DIOPT Version :9

Sequence 1:NP_650621.1 Gene:CG17283 / 42094 FlyBaseID:FBgn0038505 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_001104613.1 Gene:Cym / 229697 MGIID:2684977 Length:379 Species:Mus musculus


Alignment Length:347 Identity:124/347 - (35%)
Similarity:184/347 - (53%) Gaps:24/347 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 FLA-NRYGFSFAKSS----GTATLKNTANMEYTCKMNIGTPKQKFTVLPDTGSSNIWVPGPHCKS 183
            ||: .:|.||...|.    .:..|.|..:.||...:.||||.|:|||:.|||||.:|||..:|.|
Mouse    43 FLSRQQYEFSEKNSRIGVVASEPLINYLDSEYFGTIYIGTPPQEFTVVFDTGSSELWVPSVYCNS 107

  Fly   184 KACKKHKQYHPAKSSTYVKNGKSFAITYGSGSVAGVLAKDTVRIAGLVVTNQTFAMTTKEPGTTF 248
            |.|:.|.::.|:||.|:....|...:.||:|.:.|.||.|||.::.:||::||..::|:|||..|
Mouse   108 KVCRNHHRFDPSKSITFQNLSKPLFVQYGTGRMEGFLAYDTVTVSDIVVSHQTVGLSTQEPGDIF 172

  Fly   249 VTSNFDGILGLGYRSIAVDNVKTLVQNMCSEDVITSCKFAICMKGGGSSSRGGAIIFGSSNTSAY 313
            ..|.|||||||.|.:.|......:..||.:..::....|::.|   ..:.:|..:..|:.:.|.:
Mouse   173 TYSPFDGILGLAYPTFASKYSVPIFDNMMNRHLVAQDLFSVYM---SRNEQGSMLTLGAIDQSYF 234

  Fly   314 SGSNSYTYTPVTKKGYWQFTLQDIYVGGTKVS--GSVQAIVDSGTSLITAPTAIYNKINKVIGCR 376
            .|  |..:.|||.:||||||:..|.:.|..|:  |...|::|:||:|:|.|......|.:|||..
Mouse   235 IG--SLHWVPVTVQGYWQFTVDRITINGEVVACQGGCPAVLDTGTALLTGPGRDILNIQQVIGAV 297

  Fly   377 ATSSG----ECWMKCAKKIPDFTFVIAGKKFVVKGNKMKLKVRTNRGRTVCISAVTEVPDEPVIL 437
            ...:.    :||.  ...:|...|.|.|::|     .:.....||:.:..|.|...: .....||
Mouse   298 QGHNDQFDIDCWR--LDIMPTVVFEIHGREF-----PLPPYAYTNQVQGFCSSGFKQ-GSHMWIL 354

  Fly   438 GDAFIRHFCTEFDLANNRIGFA 459
            ||.|||.|.:.||.||||:|.|
Mouse   355 GDVFIREFYSVFDRANNRVGLA 376

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG17283NP_650621.1 pepsin_retropepsin_like 142..459 CDD:299705 117/322 (36%)
Asp 149..460 CDD:278455 116/317 (37%)