DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sur-8 and PIRL3

DIOPT Version :9

Sequence 1:NP_001262665.1 Gene:Sur-8 / 42093 FlyBaseID:FBgn0038504 Length:694 Species:Drosophila melanogaster
Sequence 2:NP_563921.1 Gene:PIRL3 / 837855 AraportID:AT1G12970 Length:464 Species:Arabidopsis thaliana


Alignment Length:399 Identity:102/399 - (25%)
Similarity:177/399 - (44%) Gaps:87/399 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   191 YSNKIGQLPPEIGCLVSLRN---LALNENSLTSLPESLQ----------------------NCSQ 230
            :|:.....||.:....||.|   |..|...::||.||:.                      :.::
plant    17 HSDPASHAPPSLAIQQSLANRYPLLTNPYVISSLIESIPSTITQTLFVFGSLGPRPDPLAVSSAR 81

  Fly   231 LKVLDLRHN---------KLAEIPPVIYRL--------RSLTTLYLRFNRITAVA-------DDL 271
            .|:.:::.|         |..::...:..|        :.|..|.....|:.|.|       |::
plant    82 SKIREIKENDSLSPEDAAKEEQVYAAVVSLEEVHEGYEKQLRDLEEEIGRVYASAVESLSGGDEV 146

  Fly   272 RQLVNLTM-----------LSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPEDIGNCVNLSA 325
            .:.|...:           :.|.:::::.|..|:|.:|.|.:|:||.|:|..||:.|.....|..
plant   147 NEEVLAVIKDAEDGGVVERIDLSDHELKLLPDALGKIVGLVSLNVSRNNLRFLPDTISGLEKLEE 211

  Fly   326 LDLQHNELLDIPDSIGNLKSLVRLGMRYNRLSSVPATLKNCKSMDEFNVEGNGITQLPDGMLASL 390
            |||..|.|:.:|||||.|.:|..|.:..|:|:.:|.::..|:|:.|.:...|.:|.||       
plant   212 LDLSSNRLVFLPDSIGLLLNLRILNVTGNKLTLLPESIAQCRSLVELDASFNNLTSLP------- 269

  Fly   391 SGLTTITLSRNQFASYPTGGPAQFTNVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKENMLTALP 455
                         |::..|    ..|:..::::.|:|...|..| ...:.|..|:...|.:..||
plant   270 -------------ANFGYG----LLNLERLSIQLNKIRFFPNSI-CEMRSLRYLDAHMNEIHGLP 316

  Fly   456 LDIGTWVNMVELNLATN--ALQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKLRILDLEEN 518
            :.||...|:..:||::|  .|.:|||.|.:|.||..|.||||.::.:|::...|.||..|:|::|
plant   317 IAIGRLTNLEVMNLSSNFSDLIELPDTISDLANLRELDLSNNQIRVLPDSFFRLEKLEKLNLDQN 381

  Fly   519 RIEVLPHEI 527
            .:|..|.|:
plant   382 PLEYPPQEM 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sur-8NP_001262665.1 leucine-rich repeat 163..184 CDD:275380
leucine-rich repeat 185..207 CDD:275380 3/15 (20%)
LRR_RI 204..401 CDD:238064 58/256 (23%)
LRR_8 207..264 CDD:290566 15/98 (15%)
leucine-rich repeat 208..230 CDD:275380 8/46 (17%)
leucine-rich repeat 231..253 CDD:275380 4/38 (11%)
LRR_8 252..310 CDD:290566 17/75 (23%)
leucine-rich repeat 254..276 CDD:275380 6/28 (21%)
leucine-rich repeat 277..299 CDD:275380 4/32 (13%)
LRR_8 299..356 CDD:290566 24/56 (43%)
leucine-rich repeat 300..322 CDD:275380 9/21 (43%)
leucine-rich repeat 323..345 CDD:275380 12/21 (57%)
LRR_8 344..403 CDD:290566 12/58 (21%)
leucine-rich repeat 346..368 CDD:275380 6/21 (29%)
leucine-rich repeat 369..392 CDD:275380 5/22 (23%)
LRR_RI <379..566 CDD:238064 44/151 (29%)
leucine-rich repeat 417..440 CDD:275380 4/22 (18%)
leucine-rich repeat 441..486 CDD:275380 17/46 (37%)
LRR_8 463..520 CDD:290566 24/58 (41%)
leucine-rich repeat 487..507 CDD:275380 7/19 (37%)
leucine-rich repeat 510..532 CDD:275380 7/18 (39%)
LRR_8 532..588 CDD:290566
leucine-rich repeat 556..578 CDD:275380
leucine-rich repeat 603..626 CDD:275380
PIRL3NP_563921.1 leucine-rich repeat 163..185 CDD:275380 4/21 (19%)
LRR <185..385 CDD:227223 71/224 (32%)
leucine-rich repeat 186..208 CDD:275380 9/21 (43%)
leucine-rich repeat 209..231 CDD:275380 12/21 (57%)
leucine-rich repeat 232..254 CDD:275380 6/21 (29%)
leucine-rich repeat 255..278 CDD:275380 7/46 (15%)
leucine-rich repeat 279..301 CDD:275380 4/22 (18%)
leucine-rich repeat 302..324 CDD:275380 7/21 (33%)
leucine-rich repeat 325..349 CDD:275380 9/23 (39%)
leucine-rich repeat 350..372 CDD:275380 8/21 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm3538
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.