DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sur-8 and PIRL3

DIOPT Version :10

Sequence 1:NP_001262665.1 Gene:Sur-8 / 42093 FlyBaseID:FBgn0038504 Length:694 Species:Drosophila melanogaster
Sequence 2:NP_563921.1 Gene:PIRL3 / 837855 AraportID:AT1G12970 Length:464 Species:Arabidopsis thaliana


Alignment Length:399 Identity:102/399 - (25%)
Similarity:177/399 - (44%) Gaps:87/399 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   191 YSNKIGQLPPEIGCLVSLRN---LALNENSLTSLPESLQ----------------------NCSQ 230
            :|:.....||.:....||.|   |..|...::||.||:.                      :.::
plant    17 HSDPASHAPPSLAIQQSLANRYPLLTNPYVISSLIESIPSTITQTLFVFGSLGPRPDPLAVSSAR 81

  Fly   231 LKVLDLRHN---------KLAEIPPVIYRL--------RSLTTLYLRFNRITAVA-------DDL 271
            .|:.:::.|         |..::...:..|        :.|..|.....|:.|.|       |::
plant    82 SKIREIKENDSLSPEDAAKEEQVYAAVVSLEEVHEGYEKQLRDLEEEIGRVYASAVESLSGGDEV 146

  Fly   272 RQLVNLTM-----------LSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPEDIGNCVNLSA 325
            .:.|...:           :.|.:::::.|..|:|.:|.|.:|:||.|:|..||:.|.....|..
plant   147 NEEVLAVIKDAEDGGVVERIDLSDHELKLLPDALGKIVGLVSLNVSRNNLRFLPDTISGLEKLEE 211

  Fly   326 LDLQHNELLDIPDSIGNLKSLVRLGMRYNRLSSVPATLKNCKSMDEFNVEGNGITQLPDGMLASL 390
            |||..|.|:.:|||||.|.:|..|.:..|:|:.:|.::..|:|:.|.:...|.:|.||       
plant   212 LDLSSNRLVFLPDSIGLLLNLRILNVTGNKLTLLPESIAQCRSLVELDASFNNLTSLP------- 269

  Fly   391 SGLTTITLSRNQFASYPTGGPAQFTNVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKENMLTALP 455
                         |::..|    ..|:..::::.|:|...|..| ...:.|..|:...|.:..||
plant   270 -------------ANFGYG----LLNLERLSIQLNKIRFFPNSI-CEMRSLRYLDAHMNEIHGLP 316

  Fly   456 LDIGTWVNMVELNLATN--ALQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKLRILDLEEN 518
            :.||...|:..:||::|  .|.:|||.|.:|.||..|.||||.::.:|::...|.||..|:|::|
plant   317 IAIGRLTNLEVMNLSSNFSDLIELPDTISDLANLRELDLSNNQIRVLPDSFFRLEKLEKLNLDQN 381

  Fly   519 RIEVLPHEI 527
            .:|..|.|:
plant   382 PLEYPPQEM 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sur-8NP_001262665.1 leucine-rich repeat 163..184 CDD:275380
LRR 185..535 CDD:443914 102/399 (26%)
leucine-rich repeat 185..207 CDD:275380 3/15 (20%)
leucine-rich repeat 208..230 CDD:275380 8/46 (17%)
leucine-rich repeat 231..253 CDD:275380 4/38 (11%)
leucine-rich repeat 254..276 CDD:275380 6/28 (21%)
leucine-rich repeat 277..299 CDD:275380 4/32 (13%)
leucine-rich repeat 300..322 CDD:275380 9/21 (43%)
leucine-rich repeat 323..345 CDD:275380 12/21 (57%)
leucine-rich repeat 346..368 CDD:275380 6/21 (29%)
leucine-rich repeat 369..392 CDD:275380 5/22 (23%)
leucine-rich repeat 417..440 CDD:275380 4/22 (18%)
leucine-rich repeat 441..486 CDD:275380 17/46 (37%)
PPP1R42 472..617 CDD:455733 24/58 (41%)
leucine-rich repeat 487..507 CDD:275380 7/19 (37%)
leucine-rich repeat 510..532 CDD:275380 7/18 (39%)
leucine-rich repeat 556..578 CDD:275380
leucine-rich repeat 603..626 CDD:275380
PIRL3NP_563921.1 leucine-rich repeat 163..185 CDD:275380 4/21 (19%)
LRR 186..>389 CDD:443914 73/227 (32%)
leucine-rich repeat 186..208 CDD:275380 9/21 (43%)
leucine-rich repeat 209..231 CDD:275380 12/21 (57%)
leucine-rich repeat 232..254 CDD:275380 6/21 (29%)
leucine-rich repeat 255..278 CDD:275380 7/46 (15%)
leucine-rich repeat 279..301 CDD:275380 4/22 (18%)
leucine-rich repeat 302..324 CDD:275380 7/21 (33%)
leucine-rich repeat 325..349 CDD:275380 9/23 (39%)
leucine-rich repeat 350..372 CDD:275380 8/21 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.