DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sur-8 and AT5G23400

DIOPT Version :9

Sequence 1:NP_001262665.1 Gene:Sur-8 / 42093 FlyBaseID:FBgn0038504 Length:694 Species:Drosophila melanogaster
Sequence 2:NP_197731.1 Gene:AT5G23400 / 832405 AraportID:AT5G23400 Length:589 Species:Arabidopsis thaliana


Alignment Length:449 Identity:126/449 - (28%)
Similarity:207/449 - (46%) Gaps:77/449 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 IPSTVKECVHLTELYLYSNKI-------------------------GQLPPEIGCLVSLRNLALN 214
            ||::......|.:|.|..|.:                         |.:|...|.|..|..:.|.
plant   124 IPNSFSNLTSLRQLILDDNSLQGNVLSSLGHLPLLEILSLAGNRFSGLVPASFGSLRRLTTMNLA 188

  Fly   215 ENSLTS-LPESLQNCSQLKVLDLRHNKLA-EIPPVIYRLRSLTTLYLRFNRITAVAD-DLRQLVN 276
            .||.:. :|.:.:|..:|:.|||..|.|: .||..|.:.::||.|||..||.:.|.. .:..|..
plant   189 RNSFSGPIPVTFKNLLKLENLDLSSNLLSGPIPDFIGQFQNLTNLYLSSNRFSGVLPVSVYSLRK 253

  Fly   277 LTMLSLRENKIR-ELGSAIGALVNLTTLDVSHN-HLEHLPEDIGNCVNLSALDLQHNELLDIPDS 339
            |..:||..|.:. .|......|.:||:|.:|.| .:.|:|..|....||.:|:|..|...|....
plant   254 LQTMSLERNGLTGPLSDRFSYLKSLTSLQLSGNKFIGHIPASITGLQNLWSLNLSRNLFSDPLPV 318

  Fly   340 IG--NLKSLVRLGMRYNRLS--SVPATLKNCKSMDEFNVEGNGITQLPDGMLASLSGLTTIT--- 397
            :|  ...||:.:.:.||.|:  ::|:.::: |.:.:.|:.|..:.    |....|:..||:|   
plant   319 VGARGFPSLLSIDLSYNNLNLGAIPSWIRD-KQLSDINLAGCKLR----GTFPKLTRPTTLTSLD 378

  Fly   398 LSRNQFASYPTGGPAQF----TNVYSINLEHN--RID----KIPYGIFSRAKGLTKLNMKENMLT 452
            ||.|    :.||..:.|    |||..:.|..|  |.|    |:|.|:.|       :::..|::|
plant   379 LSDN----FLTGDVSAFLTSLTNVQKVKLSKNQLRFDLSKLKLPEGVAS-------IDLSSNLVT 432

  Fly   453 ALPLDIGTWVN------MVELNLATNALQ-KLPDDIMNLQNLEIL-ILSNNMLKKIPNTIGNLRK 509
            .   .:.:.:|      :.|::|..|.:. ::||...:| ||::| |.||.:..:||::|.||.:
plant   433 G---SLSSLINNKTSSFLEEIHLTNNQISGRIPDFGESL-NLKVLNIGSNKISGQIPSSISNLVE 493

  Fly   510 LRILDLEENRIE-VLPHEIGLLHELQRLILQTNQIT-MLPRSIGHLGNLTHLSVSENNL 566
            |..||:..|.|. .:|..||.|.:|:.|.|..|.:| .:|.|:.::..:.|.|...|.|
plant   494 LVRLDISRNHITGGIPQAIGQLAQLKWLDLSINALTGRIPDSLLNIKTIKHASFRANRL 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sur-8NP_001262665.1 leucine-rich repeat 163..184 CDD:275380 2/8 (25%)
leucine-rich repeat 185..207 CDD:275380 8/46 (17%)
LRR_RI 204..401 CDD:238064 62/208 (30%)
LRR_8 207..264 CDD:290566 21/58 (36%)
leucine-rich repeat 208..230 CDD:275380 6/22 (27%)
leucine-rich repeat 231..253 CDD:275380 9/22 (41%)
LRR_8 252..310 CDD:290566 20/60 (33%)
leucine-rich repeat 254..276 CDD:275380 9/22 (41%)
leucine-rich repeat 277..299 CDD:275380 6/22 (27%)
LRR_8 299..356 CDD:290566 19/59 (32%)
leucine-rich repeat 300..322 CDD:275380 8/22 (36%)
leucine-rich repeat 323..345 CDD:275380 6/23 (26%)
LRR_8 344..403 CDD:290566 17/63 (27%)
leucine-rich repeat 346..368 CDD:275380 5/23 (22%)
leucine-rich repeat 369..392 CDD:275380 4/22 (18%)
LRR_RI <379..566 CDD:238064 61/209 (29%)
leucine-rich repeat 417..440 CDD:275380 9/28 (32%)
leucine-rich repeat 441..486 CDD:275380 9/51 (18%)
LRR_8 463..520 CDD:290566 22/64 (34%)
leucine-rich repeat 487..507 CDD:275380 8/20 (40%)
leucine-rich repeat 510..532 CDD:275380 9/22 (41%)
LRR_8 532..588 CDD:290566 11/36 (31%)
leucine-rich repeat 556..578 CDD:275380 4/11 (36%)
leucine-rich repeat 603..626 CDD:275380
AT5G23400NP_197731.1 PLN00113 39..>557 CDD:215061 126/449 (28%)
leucine-rich repeat 109..133 CDD:275380 2/8 (25%)
leucine-rich repeat 134..157 CDD:275380 4/22 (18%)
leucine-rich repeat 158..181 CDD:275380 4/22 (18%)
leucine-rich repeat 182..205 CDD:275380 6/22 (27%)
leucine-rich repeat 206..229 CDD:275380 9/22 (41%)
leucine-rich repeat 230..253 CDD:275380 9/22 (41%)
leucine-rich repeat 254..277 CDD:275380 6/22 (27%)
leucine-rich repeat 278..301 CDD:275380 8/22 (36%)
leucine-rich repeat 302..326 CDD:275380 6/23 (26%)
leucine-rich repeat 374..397 CDD:275380 7/26 (27%)
leucine-rich repeat 398..440 CDD:275380 11/51 (22%)
leucine-rich repeat 447..469 CDD:275380 6/22 (27%)
leucine-rich repeat 470..493 CDD:275380 10/22 (45%)
leucine-rich repeat 494..517 CDD:275380 9/22 (41%)
leucine-rich repeat 518..536 CDD:275380 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54393
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.