DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sur-8 and Lrriq4

DIOPT Version :9

Sequence 1:NP_001262665.1 Gene:Sur-8 / 42093 FlyBaseID:FBgn0038504 Length:694 Species:Drosophila melanogaster
Sequence 2:XP_011248011.1 Gene:Lrriq4 / 68307 MGIID:1915557 Length:599 Species:Mus musculus


Alignment Length:578 Identity:156/578 - (26%)
Similarity:251/578 - (43%) Gaps:91/578 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 ETRPKMVTVKHPESNKPKP-----TTKKSKPIQADQDVIKALQRCRDEGIKRLDLSKSSITVIPS 177
            |..||::..|.|.....:.     :.:..|.|.::...:|.|:        .:.|..:.|..||.
Mouse    48 EHLPKVLQKKEPHQLTDRTFFIDGSNQGLKTIPSEILALKELE--------EVHLENNQIAEIPQ 104

  Fly   178 TVKECVHLTELYLYSNKIGQLPPEIGCLVSLRNLALNEN------------------------SL 218
            .:::..:...|||::|.:..|.||:|.|.||.:|.|:.|                        .|
Mouse   105 GIQQLQNTKVLYLHNNSLQDLCPELGALSSLESLDLSGNPLVISSLHVVSRLRTLRELRLYRTGL 169

  Fly   219 TSLPESL-QNCSQLKVLDLRHNKLAEIPPVIYRLRSLTTLYLRFNRITAVADDLRQLVNLTMLSL 282
            |.:|..: ::...|::..|..|.|..:|..|.....|..:||:.|.......||..|.||.::.|
Mouse   170 TEIPTGICKSLHHLELFGLSENFLESLPEEIVNQTKLREIYLKQNHFEVFPCDLCVLYNLEVIDL 234

  Fly   283 RENKIRELGSAIGALVNLTTLDVSHNHLEHLPEDIGNCVNLSALDLQHNELLDIPDSIGNLKSLV 347
            .|||::.:...||.||.|....|:.|||..|||.:..|..||.|||.||.:..:|.|:..|..|.
Mouse   235 DENKLKSIPGDIGHLVRLQKFYVASNHLMSLPESLSQCSKLSVLDLTHNSIHSLPSSLELLTELT 299

  Fly   348 RLGMRYNRLSSVPATLKNCKSMDEFNVEGNGITQLPDGMLASLSGLTTITLSRNQFASYPTGGPA 412
            .:|:..|||..||..|.:..|:....:....:..|.|. ...|..|..:.||:|....:|....|
Mouse   300 EVGLSGNRLEKVPRLLCSWVSLHLLYLRNTSLHGLRDS-FKRLINLRFLDLSQNHIEHFPVQICA 363

  Fly   413 QFTNVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKENMLTALPLDIGTWVNMVELNLAT---NAL 474
             ..|:..:.|:.|::.::|..| |....|..|.:..|.|.:.|.:|.:.:::.:|.:..   :.|
Mouse   364 -LKNLEILALDDNKVRQLPPSI-SLLSNLKILGLTGNDLLSFPEEIFSLISLEKLYIGQDQGSKL 426

  Fly   475 QKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKLRILDLEENRIEVLPHEIGLLHELQRLILQ 539
            ..||::|..|.||:.|.:.||.|:::|.::|.:..|.:||...|.::.||..|.....|:.|:|:
Mouse   427 SSLPENIKRLMNLKELYIENNRLEQLPASLGLMPNLEVLDCRHNLLKQLPDAICRTRNLRELLLE 491

  Fly   540 TNQITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELALCQNLK 604
            .|.:..||.::.||.||..|::..|.:...|           :|: .|.|.|      |:.::||
Mouse   492 DNLLCCLPENLDHLVNLKVLTLMNNPMVDPP-----------IYV-CNQGNE------AIWKHLK 538

  Fly   605 YLNIDKCPLSTIPPEIQAGGPSLVLQWLKMHSPYRQMXDVDGVWRTVYVGSDCYYQYE 662
            ...|.|...:|    |||        |                ||.:.|... |..||
Mouse   539 ENRIRKMMATT----IQA--------W----------------WRGIMVRKG-YGSYE 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sur-8NP_001262665.1 leucine-rich repeat 163..184 CDD:275380 4/20 (20%)
leucine-rich repeat 185..207 CDD:275380 9/21 (43%)
LRR_RI 204..401 CDD:238064 66/221 (30%)
LRR_8 207..264 CDD:290566 18/81 (22%)
leucine-rich repeat 208..230 CDD:275380 7/46 (15%)
leucine-rich repeat 231..253 CDD:275380 6/21 (29%)
LRR_8 252..310 CDD:290566 20/57 (35%)
leucine-rich repeat 254..276 CDD:275380 7/21 (33%)
leucine-rich repeat 277..299 CDD:275380 8/21 (38%)
LRR_8 299..356 CDD:290566 22/56 (39%)
leucine-rich repeat 300..322 CDD:275380 9/21 (43%)
leucine-rich repeat 323..345 CDD:275380 10/21 (48%)
LRR_8 344..403 CDD:290566 16/58 (28%)
leucine-rich repeat 346..368 CDD:275380 8/21 (38%)
leucine-rich repeat 369..392 CDD:275380 3/22 (14%)
LRR_RI <379..566 CDD:238064 54/189 (29%)
leucine-rich repeat 417..440 CDD:275380 5/22 (23%)
leucine-rich repeat 441..486 CDD:275380 12/47 (26%)
LRR_8 463..520 CDD:290566 18/59 (31%)
leucine-rich repeat 487..507 CDD:275380 7/19 (37%)
leucine-rich repeat 510..532 CDD:275380 7/21 (33%)
LRR_8 532..588 CDD:290566 14/55 (25%)
leucine-rich repeat 556..578 CDD:275380 4/21 (19%)
leucine-rich repeat 603..626 CDD:275380 8/22 (36%)
Lrriq4XP_011248011.1 LRR_RI 48..309 CDD:393385 76/268 (28%)
leucine-rich repeat 89..111 CDD:275380 5/29 (17%)
leucine-rich repeat 112..135 CDD:275380 9/22 (41%)
leucine-rich repeat 183..205 CDD:275380 6/21 (29%)
leucine-rich repeat 206..228 CDD:275380 7/21 (33%)
LRR 228..521 CDD:227223 92/295 (31%)
leucine-rich repeat 229..251 CDD:275380 8/21 (38%)
leucine-rich repeat 252..274 CDD:275380 9/21 (43%)
leucine-rich repeat 275..297 CDD:275380 10/21 (48%)
leucine-rich repeat 298..320 CDD:275380 8/21 (38%)
leucine-rich repeat 321..343 CDD:275380 3/22 (14%)
leucine-rich repeat 344..366 CDD:275380 6/22 (27%)
leucine-rich repeat 367..389 CDD:275380 5/22 (23%)
leucine-rich repeat 390..438 CDD:275380 12/47 (26%)
leucine-rich repeat 413..436 CDD:275380 5/22 (23%)
leucine-rich repeat 439..461 CDD:275380 7/21 (33%)
leucine-rich repeat 462..484 CDD:275380 7/21 (33%)
leucine-rich repeat 485..507 CDD:275380 8/21 (38%)
IQ 543..563 CDD:197470 9/48 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 54 1.000 Domainoid score I11246
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45752
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.100

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