DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sur-8 and shoc2

DIOPT Version :9

Sequence 1:NP_001262665.1 Gene:Sur-8 / 42093 FlyBaseID:FBgn0038504 Length:694 Species:Drosophila melanogaster
Sequence 2:NP_001038251.1 Gene:shoc2 / 555476 ZFINID:ZDB-GENE-050208-523 Length:561 Species:Danio rerio


Alignment Length:517 Identity:323/517 - (62%)
Similarity:411/517 - (79%) Gaps:6/517 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 TVKHPESNKPKPTTKKSKPIQADQDVIKALQRCRDEGIKRLDLSKSSITVIPSTVKECVHLTELY 189
            |:|.|  |.|..|.|||    ::.:|||.|.:||:|...||||||.||.::||::||...|||||
Zfish    50 TIKRP--NPPPSTRKKS----SNAEVIKELNKCREENSMRLDLSKRSIHLLPSSIKELTQLTELY 108

  Fly   190 LYSNKIGQLPPEIGCLVSLRNLALNENSLTSLPESLQNCSQLKVLDLRHNKLAEIPPVIYRLRSL 254
            |||||:..||||:|||..|..|||:||||||||:||.|..:|::||||||||.|||.|:||:.||
Zfish   109 LYSNKLQSLPPEVGCLSGLVTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPAVVYRVSSL 173

  Fly   255 TTLYLRFNRITAVADDLRQLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPEDIGN 319
            |||||||||||.|..|::.|..|||||:|||||::|.:.||.|.||.||||:||.|||||::|||
Zfish   174 TTLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGN 238

  Fly   320 CVNLSALDLQHNELLDIPDSIGNLKSLVRLGMRYNRLSSVPATLKNCKSMDEFNVEGNGITQLPD 384
            |..::.||||||:|||:|::||||.|:.|||:||||||::|.:|..|:.::|.|:|.|.|:.||:
Zfish   239 CTQITNLDLQHNDLLDLPETIGNLASINRLGLRYNRLSAIPRSLAKCRELEELNLENNNISVLPE 303

  Fly   385 GMLASLSGLTTITLSRNQFASYPTGGPAQFTNVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKEN 449
            |:|:||..||::||:||.|.|||.|||:||:.:||:|:|||||:|||:|||||||.|:|||||:|
Zfish   304 GLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDN 368

  Fly   450 MLTALPLDIGTWVNMVELNLATNALQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKLRILD 514
            .||:||||.|||.:|||||||||.|.|:|:||..|.:||:|.||||:|||:|..||||||||.||
Zfish   369 QLTSLPLDFGTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLSNNLLKKLPYGIGNLRKLRELD 433

  Fly   515 LEENRIEVLPHEIGLLHELQRLILQTNQITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESL 579
            ||||::|.||:||..|.:||:|:|..||:|.|||.||||.|||:|.:.||.||.||||||:||:|
Zfish   434 LEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTYLGLGENLLQHLPEEIGTLENL 498

  Fly   580 ENLYINQNPGLEKLPFELALCQNLKYLNIDKCPLSTIPPEIQAGGPSLVLQWLKMHSPYRQM 641
            |:||:|.||.|..||||||||..|..::|:.||||.:||:|.|||||.::|:|||..|||.|
Zfish   499 EDLYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAM 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sur-8NP_001262665.1 leucine-rich repeat 163..184 CDD:275380 12/20 (60%)
leucine-rich repeat 185..207 CDD:275380 17/21 (81%)
LRR_RI 204..401 CDD:238064 121/196 (62%)
LRR_8 207..264 CDD:290566 40/56 (71%)
leucine-rich repeat 208..230 CDD:275380 15/21 (71%)
leucine-rich repeat 231..253 CDD:275380 15/21 (71%)
LRR_8 252..310 CDD:290566 38/57 (67%)
leucine-rich repeat 254..276 CDD:275380 15/21 (71%)
leucine-rich repeat 277..299 CDD:275380 14/21 (67%)
LRR_8 299..356 CDD:290566 38/56 (68%)
leucine-rich repeat 300..322 CDD:275380 16/21 (76%)
leucine-rich repeat 323..345 CDD:275380 14/21 (67%)
LRR_8 344..403 CDD:290566 30/58 (52%)
leucine-rich repeat 346..368 CDD:275380 12/21 (57%)
leucine-rich repeat 369..392 CDD:275380 11/22 (50%)
LRR_RI <379..566 CDD:238064 122/186 (66%)
leucine-rich repeat 417..440 CDD:275380 17/22 (77%)
leucine-rich repeat 441..486 CDD:275380 31/44 (70%)
LRR_8 463..520 CDD:290566 40/56 (71%)
leucine-rich repeat 487..507 CDD:275380 13/19 (68%)
leucine-rich repeat 510..532 CDD:275380 14/21 (67%)
LRR_8 532..588 CDD:290566 35/55 (64%)
leucine-rich repeat 556..578 CDD:275380 14/21 (67%)
leucine-rich repeat 603..626 CDD:275380 12/22 (55%)
shoc2NP_001038251.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..67 9/22 (41%)
LRR 1 80..101 11/20 (55%)
leucine-rich repeat 83..103 CDD:275380 12/19 (63%)
LRR_8 102..160 CDD:290566 39/57 (68%)
LRR 2 103..124 15/20 (75%)
leucine-rich repeat 104..126 CDD:275380 17/21 (81%)
LRR_RI <124..229 CDD:238064 69/104 (66%)
LRR 3 126..148 15/21 (71%)
leucine-rich repeat 127..149 CDD:275380 15/21 (71%)
LRR 4 149..170 14/20 (70%)
leucine-rich repeat 150..172 CDD:275380 15/21 (71%)
LRR_8 171..229 CDD:290566 38/57 (67%)
LRR 5 172..193 15/20 (75%)
leucine-rich repeat 173..195 CDD:275380 15/21 (71%)
LRR 6 195..216 13/20 (65%)
leucine-rich repeat 196..218 CDD:275380 14/21 (67%)
LRR 7 218..239 15/20 (75%)
leucine-rich repeat 219..241 CDD:275380 16/21 (76%)
LRR 8 241..262 12/20 (60%)
leucine-rich repeat 242..264 CDD:275380 14/21 (67%)
LRR 9 264..286 12/21 (57%)
leucine-rich repeat 265..311 CDD:275380 23/45 (51%)
LRR_RI 268..483 CDD:238064 135/214 (63%)
LRR 10 287..308 9/20 (45%)
LRR 11 311..332 13/20 (65%)
leucine-rich repeat 312..359 CDD:275380 32/46 (70%)
leucine-rich repeat 316..335 CDD:275380 13/18 (72%)
LRR 12 335..356 14/20 (70%)
LRR 13 359..379 13/19 (68%)
leucine-rich repeat 360..382 CDD:275380 16/21 (76%)
LRR_8 381..439 CDD:290566 40/57 (70%)
LRR 14 382..403 14/20 (70%)
leucine-rich repeat 383..405 CDD:275380 15/21 (71%)
LRR 15 405..427 14/21 (67%)
leucine-rich repeat 406..428 CDD:275380 15/21 (71%)
LRR_8 427..485 CDD:290566 36/57 (63%)
LRR 16 428..449 14/20 (70%)
leucine-rich repeat 429..451 CDD:275380 14/21 (67%)
LRR 17 451..473 13/21 (62%)
leucine-rich repeat 452..474 CDD:275380 14/21 (67%)
LRR 18 474..495 14/20 (70%)
leucine-rich repeat 475..498 CDD:275380 15/22 (68%)
LRR 19 497..519 14/21 (67%)
LRR 20 521..542 9/20 (45%)
leucine-rich repeat 522..542 CDD:275380 9/19 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7219
Inparanoid 1 1.050 660 1.000 Inparanoid score I745
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D234290at33208
OrthoFinder 1 1.000 - - FOG0007307
OrthoInspector 1 1.000 - - oto39621
orthoMCL 1 0.900 - - OOG6_101852
Panther 1 1.100 - - LDO PTHR45752
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R9772
SonicParanoid 1 1.000 - - X5412
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.960

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