DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sur-8 and lrrc1

DIOPT Version :10

Sequence 1:NP_001262665.1 Gene:Sur-8 / 42093 FlyBaseID:FBgn0038504 Length:694 Species:Drosophila melanogaster
Sequence 2:NP_001013463.2 Gene:lrrc1 / 541316 ZFINID:ZDB-GENE-050320-1 Length:526 Species:Danio rerio


Alignment Length:444 Identity:130/444 - (29%)
Similarity:213/444 - (47%) Gaps:52/444 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 LQRCRDEGIKRLDLSKSSITVIPSTV-KECVHLTELYLYSNKIGQLPPEIGCLVSLRNLALNENS 217
            |.|| :..|:.:|....|:..:|..: :....|.||.|.:|::..||.....|..||.|.|::|.
Zfish     7 LWRC-NRHIEAIDKRHCSLLFVPDEIYRYRGSLEELLLDANQLRDLPKPFFNLTKLRKLGLSDNE 70

  Fly   218 LTSLPESLQNCSQLKVLDLRHNKLAEIPPVIYRLRSLTTLYLRFNRITAVADDLRQLVNLTMLSL 282
            :..||..:.|.:||..||:..|.:.|:|..|...::|.......|.:|.:.:...:|.||..||:
Zfish    71 IQRLPGDIANFNQLVELDISRNDIMELPESISYCKTLQVADFSGNPLTRLPESFPELRNLACLSI 135

  Fly   283 RENKIRELGSAIGALVNLTTLDVSHNHLEHLPEDIGNCVNLSALDLQHNELLDIPDSIGNLKSLV 347
            .:..::.|...||.|.||.:|::..|.|.:|||.:.....|..||:..|||.::|::||.|.||.
Zfish   136 NDISLQALPDNIGNLCNLVSLELRENLLTYLPESLSQLQKLEELDVGSNELYNLPETIGCLVSLK 200

  Fly   348 RLGMRYNRLSSVPATLKNCKSMDEFNVEGNGITQLPDGMLASLSGLTTITLSRNQFASYPTGGPA 412
            .|.:..|:||.:||.:.:.:|:...:|..|.:.:||:.| .:|..||.:.:|:            
Zfish   201 DLWLDGNQLSDIPAEVGSMRSLTCLDVSENKLERLPEEM-GNLLSLTDLLVSQ------------ 252

  Fly   413 QFTNVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKENMLTALPLDIGTWVNMVELNLATNALQKL 477
                        |.||.:|.|| .:.|.|:.|...:|.|..||..||                  
Zfish   253 ------------NLIDLLPEGI-GKLKRLSILKADQNRLVQLPESIG------------------ 286

  Fly   478 PDDIMNLQNLEILILSNNMLKKIPNTIGNLRKLRILDLEENRIEVLPHEIGLLHELQRLILQTNQ 542
                 :.::|..|:|:.|.|..:|.:||.|:||...:.:.||:..||.|||....|..|.::.|:
Zfish   287 -----HCESLTELVLTENQLVNLPRSIGKLKKLSNFNCDRNRLASLPKEIGGCCSLNVLCVRENR 346

  Fly   543 ITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFE 596
            :..:|..:.....|..|.:|.|.|.:||..:.||. |:.|::::|.....|.|:
Zfish   347 LMRIPPELSQASELHVLDLSGNRLLYLPLTLTSLR-LKALWLSENQSQPLLTFQ 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sur-8NP_001262665.1 leucine-rich repeat 163..184 CDD:275380 3/21 (14%)
LRR 185..535 CDD:443914 106/349 (30%)
leucine-rich repeat 185..207 CDD:275380 8/21 (38%)
leucine-rich repeat 208..230 CDD:275380 8/21 (38%)
leucine-rich repeat 231..253 CDD:275380 7/21 (33%)
leucine-rich repeat 254..276 CDD:275380 4/21 (19%)
leucine-rich repeat 277..299 CDD:275380 7/21 (33%)
leucine-rich repeat 300..322 CDD:275380 7/21 (33%)
leucine-rich repeat 323..345 CDD:275380 10/21 (48%)
leucine-rich repeat 346..368 CDD:275380 7/21 (33%)
leucine-rich repeat 369..392 CDD:275380 6/22 (27%)
leucine-rich repeat 417..440 CDD:275380 6/22 (27%)
leucine-rich repeat 441..486 CDD:275380 8/44 (18%)
PPP1R42 472..617 CDD:455733 36/125 (29%)
leucine-rich repeat 487..507 CDD:275380 8/19 (42%)
leucine-rich repeat 510..532 CDD:275380 8/21 (38%)
leucine-rich repeat 556..578 CDD:275380 9/21 (43%)
leucine-rich repeat 603..626 CDD:275380
lrrc1NP_001013463.2 None
Blue background indicates that the domain is not in the aligned region.

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