DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sur-8 and chp

DIOPT Version :9

Sequence 1:NP_001262665.1 Gene:Sur-8 / 42093 FlyBaseID:FBgn0038504 Length:694 Species:Drosophila melanogaster
Sequence 2:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster


Alignment Length:653 Identity:155/653 - (23%)
Similarity:248/653 - (37%) Gaps:182/653 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 GIKRLDLSKSSITVIPSTVKECVHLTELYLYSNKIGQ------LPPE-IGCLVSLRNLALNENSL 218
            |:||||.|::.|:.|.:   :..|.....|.|.|:..      ||.| :..|.||:.|..:.|.:
  Fly   474 GLKRLDFSENGISSIEN---DAFHEIGHSLISLKMSHGYSGSALPAEPLRHLTSLQELDFSNNHI 535

  Fly   219 TSLPE-SLQNCSQLKVLDLRHNKLAEIPPVIYR--LRS-LTTLYLRFNRITAVA----------- 268
            :|:.: |......|::|:|..|::.::....::  :.| |..:.||||.:|:::           
  Fly   536 SSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFFDLEALR 600

  Fly   269 ----DD----------LRQLVNLTMLSLRENKIRELG---------------------------- 291
                ||          ...|..|..||||.|||..|.                            
  Fly   601 KLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQLPNFNFDYF 665

  Fly   292 SAIGALVNLTTLDVSHNHLEHL--------PEDIGNCV--NLSALDLQHNELLDI---------- 336
            ..:|.|.|| .::||||.:..|        ..:.|...  |:..|||.||.:..|          
  Fly   666 DQVGTLSNL-NVNVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKILDLSHNNISIIHPGYFRPAEI 729

  Fly   337 ----------------PDSIGNLKSLVRLGMRYNRLSSVP-ATLKNCKSMDEFNVEGNGITQLPD 384
                            .|..||:..|..|.:.||.:..:. ...||.|.:.......|.::.:|.
  Fly   730 SLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDIPQ 794

  Fly   385 GMLASLSGLTTITLSRNQFASYP-----TGGPAQFTNVYSINLEHNRIDKIPYGIFSRAKGLT-- 442
            .:...:.||..:..|.|.....|     .||      :..:::.||.:.|||....|....||  
  Fly   795 DIFKPVQGLRIVDFSHNHLRGLPDNLFYNGG------MEKLDVSHNMMLKIPSSSLSSLAALTLC 853

  Fly   443 KLNMKENMLTALP-------------LDI-------------GTWVNMVELNLATNALQKLPD-D 480
            :|::..|.::.:.             |||             .|...:..|:|:.|...|:.| .
  Fly   854 ELHLSNNFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDAVFATMPKLAVLDLSHNRDLKVMDKS 918

  Fly   481 IMNLQN------LEILILSN----------------NMLKKIPNTIG-NLRKLRILDLEENRIEV 522
            .|.|:|      ||.:.||.                |.|..||..:. |:..||:|||..|.:..
  Fly   919 FMGLENSLIKLGLENISLSTVPEIRLKYLREFRLGYNELPSIPQELAHNMSNLRMLDLSNNDLTN 983

  Fly   523 LPHEIGLLHELQRLILQTNQITMLPRSI--GHLGNLTHLSVSENNLQFLPEEIGSLES---LENL 582
            :|.....|..|:||:|..|.||.|..:.  |...:|..|.:|...|.:.  |.|.|:|   |.:|
  Fly   984 VPLMTQALPHLRRLMLSGNPITSLNNNSFDGVNEDLEMLDISNFRLHYF--EYGCLDSLPHLRSL 1046

  Fly   583 YINQNPGLE--KLPFELALCQNLKYLNID-KCPLSTIPPEIQAG-GPSLVLQWLKMHSPYRQMXD 643
            .:.....||  .:|..|....|::.|.|: ..|.:.|   ::.| ||:..:|.|::.:|.....:
  Fly  1047 KLTAYSHLEHFNIPHLLRHHYNIRQLWIEAPQPFTRI---VKKGSGPTQEMQTLQLGNPTDLQRE 1108

  Fly   644 VDG 646
            ::|
  Fly  1109 MEG 1111

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sur-8NP_001262665.1 leucine-rich repeat 163..184 CDD:275380 7/20 (35%)
leucine-rich repeat 185..207 CDD:275380 7/28 (25%)
LRR_RI 204..401 CDD:238064 62/290 (21%)
LRR_8 207..264 CDD:290566 16/60 (27%)
leucine-rich repeat 208..230 CDD:275380 5/22 (23%)
leucine-rich repeat 231..253 CDD:275380 4/23 (17%)
LRR_8 252..310 CDD:290566 27/111 (24%)
leucine-rich repeat 254..276 CDD:275380 9/46 (20%)
leucine-rich repeat 277..299 CDD:275380 11/49 (22%)
LRR_8 299..356 CDD:290566 22/92 (24%)
leucine-rich repeat 300..322 CDD:275380 7/31 (23%)
leucine-rich repeat 323..345 CDD:275380 9/47 (19%)
LRR_8 344..403 CDD:290566 13/59 (22%)
leucine-rich repeat 346..368 CDD:275380 6/22 (27%)
leucine-rich repeat 369..392 CDD:275380 2/22 (9%)
LRR_RI <379..566 CDD:238064 59/245 (24%)
leucine-rich repeat 417..440 CDD:275380 6/22 (27%)
leucine-rich repeat 441..486 CDD:275380 15/73 (21%)
LRR_8 463..520 CDD:290566 23/80 (29%)
leucine-rich repeat 487..507 CDD:275380 8/36 (22%)
leucine-rich repeat 510..532 CDD:275380 8/21 (38%)
LRR_8 532..588 CDD:290566 19/60 (32%)
leucine-rich repeat 556..578 CDD:275380 7/21 (33%)
leucine-rich repeat 603..626 CDD:275380 6/24 (25%)
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380
LRR_8 102..163 CDD:290566
leucine-rich repeat 104..128 CDD:275380
LRR_RI <128..261 CDD:238064
leucine-rich repeat 129..152 CDD:275380
LRR_8 152..212 CDD:290566
leucine-rich repeat 153..177 CDD:275380
leucine-rich repeat 178..201 CDD:275380
LRR_8 202..261 CDD:290566
leucine-rich repeat 202..226 CDD:275380
leucine-rich repeat 227..250 CDD:275380
leucine-rich repeat 251..279 CDD:275380
leucine-rich repeat 280..326 CDD:275380
LRR_8 326..386 CDD:290566
leucine-rich repeat 327..348 CDD:275380
leucine-rich repeat 352..375 CDD:275380
leucine-rich repeat 376..401 CDD:275380
leucine-rich repeat 426..450 CDD:275378
LRR_RI <448..651 CDD:238064 45/179 (25%)
leucine-rich repeat 451..474 CDD:275380 155/653 (24%)
LRR_8 473..559 CDD:290566 26/87 (30%)
leucine-rich repeat 475..524 CDD:275380 15/51 (29%)
leucine-rich repeat 500..519 CDD:275380 6/18 (33%)
leucine-rich repeat 525..548 CDD:275380 5/22 (23%)
leucine-rich repeat 549..574 CDD:275380 4/24 (17%)
LRR_8 573..633 CDD:290566 16/59 (27%)
leucine-rich repeat 575..598 CDD:275380 6/22 (27%)
leucine-rich repeat 599..622 CDD:275380 3/22 (14%)
LRR_8 622..683 CDD:290566 17/61 (28%)
leucine-rich repeat 623..646 CDD:275380 9/22 (41%)
leucine-rich repeat 647..730 CDD:275380 17/83 (20%)
leucine-rich repeat 648..673 CDD:275380 2/24 (8%)
leucine-rich repeat 674..705 CDD:275380 7/31 (23%)
LRR_8 704..763 CDD:290566 12/58 (21%)
leucine-rich repeat 731..754 CDD:275380 3/22 (14%)
LRR_8 753..813 CDD:290566 13/59 (22%)
leucine-rich repeat 755..778 CDD:275380 6/22 (27%)
leucine-rich repeat 779..802 CDD:275380 2/22 (9%)
leucine-rich repeat 803..823 CDD:275380 4/19 (21%)
leucine-rich repeat 852..876 CDD:275380 2/23 (9%)
LRR_8 854..910 CDD:290566 8/55 (15%)
LRR_RI <877..>1006 CDD:238064 35/128 (27%)
leucine-rich repeat 877..900 CDD:275380 4/22 (18%)
leucine-rich repeat 901..925 CDD:275380 7/23 (30%)
leucine-rich repeat 926..946 CDD:275380 4/19 (21%)
LRR_8 947..1004 CDD:290566 18/56 (32%)
leucine-rich repeat 947..970 CDD:275380 5/22 (23%)
leucine-rich repeat 971..993 CDD:275380 8/21 (38%)
LRR_8 992..1049 CDD:290566 19/58 (33%)
leucine-rich repeat 994..1014 CDD:275380 8/19 (42%)
leucine-rich repeat 1019..1042 CDD:275380 8/24 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.