DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sur-8 and Lrrd1

DIOPT Version :9

Sequence 1:NP_001262665.1 Gene:Sur-8 / 42093 FlyBaseID:FBgn0038504 Length:694 Species:Drosophila melanogaster
Sequence 2:XP_216085.3 Gene:Lrrd1 / 296836 RGDID:1562785 Length:855 Species:Rattus norvegicus


Alignment Length:642 Identity:172/642 - (26%)
Similarity:282/642 - (43%) Gaps:96/642 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 SNGSAEAPTLCFAGGSGTAGAIAGTEE-----------------LSNANSPANGAGGATGSTGS- 94
            |:.:.|.|:      :.:...:.|.||                 |||:.||.:.....|..... 
  Rat    52 SSENTEQPS------ASSTSQLNGNEETNIEIPFSDTNIEEVIPLSNSESPQSSESSETNEAEEY 110

  Fly    95 -------GQQPTGS--NGHS------------HLHNENNANMPPETRPKMVTVKHPESNKPKPTT 138
                   |::..|.  |||.            ||..:.....|.:    :|.||:          
  Rat   111 HPVKFPIGRKFRGRTFNGHHKGFDMESDTFTVHLDAKGLQEFPVD----IVKVKY---------- 161

  Fly   139 KKSKPIQADQDVIKALQRCRDE---GIKRLDLSKSSITVIPSTVKECVHLTELYLYSNKIGQLPP 200
              .|.:..|::.||..|.....   |::.|.|.::.::.||..::...:|..|....|:|..:|.
  Rat   162 --VKYLYLDKNQIKTFQGADPGDLLGLETLSLQENGLSSIPQEIQLFHNLKVLNASYNEISHIPK 224

  Fly   201 EIGCLVSLRNLALNENSLTSLPESLQNCSQLKVLDLRHNKLAEIPPVIYRLRSLTTLYLRFNRIT 265
            |:..|.::|.|.||.|.:.|||..|:|...|:.|.|..|:|..||..:..|::|.||.|.:|::|
  Rat   225 ELLQLGNMRQLFLNSNHIESLPSGLENLRYLETLSLGKNRLTHIPDSLCGLKNLKTLNLEYNQLT 289

  Fly   266 AVADDLRQLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPEDIGNCVNLSALDLQH 330
            ..:..|..|..|..|:|..|.|..|...:..|.||..|.::||.|..|..:|...:.:..|.|..
  Rat   290 IFSKSLCFLPKLVSLNLTGNMIGSLPKEVRELKNLENLLMNHNKLTFLAVEIFQLLKIKELHLAD 354

  Fly   331 NELLDIPDSIGNLKSLVRLGMRYNRLSSVPATLKNCKSMDEFNVEGNGITQLPDGM--------- 386
            |:|..|...|.|.|.|..|.:..|.|.|:|..:.:|.:::...:..|.:.:||..:         
  Rat   355 NKLEAISPKIENFKELRLLNLDNNLLQSLPKKISHCVNLESLTLSDNNLEELPKKIRKLKNLRQL 419

  Fly   387 -------------LASLSGLTTITLSRNQFASYPTGGPAQFTN---VYSINLEHNRIDKIPYGIF 435
                         ::.||.:.::..|.||.    |..|.:..|   :..:.|.:|.|...|.|:.
  Rat   420 HANRNKMIKMAEEISHLSKIHSLEFSGNQI----THVPIEIKNCKEITRVELNYNNIMYFPVGLC 480

  Fly   436 SRAKGLTKLNMKENMLTALPLDIGTWVNMVELNLATNALQKLPDDIMNLQNLEILILSNNMLKKI 500
            : .:.|..|:...|.::.:|:|:.....::.|.|..|.:....:.:.:|.|||.|.|:.|.::||
  Rat   481 A-LQSLDYLSFNGNYISEIPVDLSFSKQLLHLELNKNKITIFSEHLCSLTNLEYLDLAKNQIRKI 544

  Fly   501 PNTIGNLRKLRILDLEENRIEVLPHEIGLLHELQRLILQTNQITMLPRSIGHLGNLTHLSVSENN 565
            |:.|..:..|.:|.|.:|:.|:.|.|:..|..||.|.:..||:..:|..|..|..:..|::|.||
  Rat   545 PHCISAMLSLHVLILSDNKFEIFPKELCSLKNLQLLDISENQLHKIPSEISKLKKIQKLNLSNNN 609

  Fly   566 LQFLPEEIGSLESLENLYINQNPG--LEKLPFELALCQNLKYLNIDKCPLSTIPPEI 620
            ....|.|:..|::||:|.|:|..|  |.:||.|::....||.|||....:..||..|
  Rat   610 FTHFPAELCQLQTLEDLNISQISGKKLTRLPEEVSRMTQLKALNISNNAIKEIPRNI 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sur-8NP_001262665.1 leucine-rich repeat 163..184 CDD:275380 4/20 (20%)
leucine-rich repeat 185..207 CDD:275380 7/21 (33%)
LRR_RI 204..401 CDD:238064 63/218 (29%)
LRR_8 207..264 CDD:290566 23/56 (41%)
leucine-rich repeat 208..230 CDD:275380 10/21 (48%)
leucine-rich repeat 231..253 CDD:275380 8/21 (38%)
LRR_8 252..310 CDD:290566 20/57 (35%)
leucine-rich repeat 254..276 CDD:275380 8/21 (38%)
leucine-rich repeat 277..299 CDD:275380 7/21 (33%)
LRR_8 299..356 CDD:290566 19/56 (34%)
leucine-rich repeat 300..322 CDD:275380 7/21 (33%)
leucine-rich repeat 323..345 CDD:275380 7/21 (33%)
LRR_8 344..403 CDD:290566 15/80 (19%)
leucine-rich repeat 346..368 CDD:275380 7/21 (33%)
leucine-rich repeat 369..392 CDD:275380 4/44 (9%)
LRR_RI <379..566 CDD:238064 53/211 (25%)
leucine-rich repeat 417..440 CDD:275380 5/22 (23%)
leucine-rich repeat 441..486 CDD:275380 9/44 (20%)
LRR_8 463..520 CDD:290566 18/56 (32%)
leucine-rich repeat 487..507 CDD:275380 9/19 (47%)
leucine-rich repeat 510..532 CDD:275380 8/21 (38%)
LRR_8 532..588 CDD:290566 20/55 (36%)
leucine-rich repeat 556..578 CDD:275380 7/21 (33%)
leucine-rich repeat 603..626 CDD:275380 8/18 (44%)
Lrrd1XP_216085.3 leucine-rich repeat 162..185 CDD:275380 5/22 (23%)
LRR_8 185..242 CDD:290566 17/56 (30%)
leucine-rich repeat 186..208 CDD:275380 4/21 (19%)
leucine-rich repeat 209..231 CDD:275380 7/21 (33%)
leucine-rich repeat 232..254 CDD:275380 10/21 (48%)
LRR_RI 253..564 CDD:238064 85/315 (27%)
LRR_8 253..311 CDD:290566 20/57 (35%)
leucine-rich repeat 255..277 CDD:275380 8/21 (38%)
leucine-rich repeat 278..300 CDD:275380 8/21 (38%)
LRR_8 299..357 CDD:290566 18/57 (32%)
leucine-rich repeat 301..323 CDD:275380 7/21 (33%)
leucine-rich repeat 324..346 CDD:275380 7/21 (33%)
leucine-rich repeat 347..392 CDD:275380 15/44 (34%)
leucine-rich repeat 439..461 CDD:275380 6/25 (24%)
leucine-rich repeat 463..484 CDD:275380 5/21 (24%)
leucine-rich repeat 487..507 CDD:275380 4/19 (21%)
leucine-rich repeat 508..530 CDD:275380 4/21 (19%)
leucine-rich repeat 531..553 CDD:275380 9/21 (43%)
LRR_RI 537..>728 CDD:238064 46/130 (35%)
LRR_8 553..610 CDD:290566 19/56 (34%)
leucine-rich repeat 554..576 CDD:275380 8/21 (38%)
leucine-rich repeat 577..599 CDD:275380 8/21 (38%)
leucine-rich repeat 600..648 CDD:275380 17/47 (36%)
leucine-rich repeat 649..671 CDD:275380 8/18 (44%)
LRR_8 670..728 CDD:290566
leucine-rich repeat 672..694 CDD:275380
leucine-rich repeat 695..717 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45752
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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