DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sur-8 and soc-2

DIOPT Version :9

Sequence 1:NP_001262665.1 Gene:Sur-8 / 42093 FlyBaseID:FBgn0038504 Length:694 Species:Drosophila melanogaster
Sequence 2:NP_001293758.1 Gene:soc-2 / 177286 WormBaseID:WBGene00004929 Length:631 Species:Caenorhabditis elegans


Alignment Length:642 Identity:309/642 - (48%)
Similarity:413/642 - (64%) Gaps:72/642 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 GGGSGNSGGGGKTSNGSAEAPTLCFAGGSGTAGAIAGTEELSNAN-SPANGAGGATGSTGSGQQP 98
            ||.|..|..|..:|:|    ||       ...|.||.:.:.:... |..:|||        ||.|
 Worm    18 GGSSSTSAPGSASSSG----PT-------KRRGRIAASIDSARRRLSLQHGAG--------GQDP 63

  Fly    99 TGSNGHSHLHN--------ENNANMPP-----ETRP----------KMVTV-------------K 127
            .      ||.:        ..|.::|.     ||.|          |.|:|             |
 Worm    64 V------HLQSIALRGRGKSENGSLPDLIEKRETPPTTANTGVSATKRVSVIATDRDRAYFLRQK 122

  Fly   128 HPESNKPKPTTKKSKPIQADQDVIKALQRCRDEGIKRLDLSKSSITVIPSTVKECVHLTELYLYS 192
            :..:||.          .|::|::|...:|::...:|||||...||.|||.:||...||||:||.
 Worm   123 NMRNNKG----------HAEKDLLKEFHKCKEAQDQRLDLSSIEITSIPSPIKELTQLTELFLYK 177

  Fly   193 NKIGQLPPEIGCLVSLRNLALNENSLTSLPESLQNCSQLKVLDLRHNKLAEIPPVIYRLRSLTTL 257
            ||:..||.|||.||:|:.|.|:||:|||||:||.:...|:.||||||||.|:|.|||::.||.||
 Worm   178 NKLTCLPTEIGQLVNLKKLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPSVIYKIGSLETL 242

  Fly   258 YLRFNRITAVADDLRQLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPEDIGNCVN 322
            :||:|||.||.:.:..|..|.||.:||||||||.||||.|.:|....||:|||..:||:||:|.:
 Worm   243 WLRYNRIVAVDEQIGNLSKLKMLDVRENKIRELPSAIGKLTSLVVCLVSYNHLTRVPEEIGDCHS 307

  Fly   323 LSALDLQHNELLDIPDSIGNLKSLVRLGMRYNRLSSVPATLKNCKSMDEFNVEGNGITQLPDGML 387
            |:.||||||:|.::|.|||.|.:|||:|:|||::..:|:.|::|:.::||.||.|.:..||..:|
 Worm   308 LTQLDLQHNDLSELPYSIGKLVNLVRIGIRYNKIRCIPSELESCQQLEEFIVESNHLQLLPPNLL 372

  Fly   388 ASLSGLTTITLSRNQFASYPTGGPAQFTNVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKENMLT 452
            ..|..:.|:.||||:..::|.|||.||.:..:||:|||:|.|||.||||:|..|||||:|||.|.
 Worm   373 TMLPKIHTVNLSRNELTAFPAGGPQQFVSTVTINMEHNQISKIPIGIFSKATRLTKLNLKENELV 437

  Fly   453 ALPLDIGTWVNMVELNLATNALQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKLRILDLEE 517
            :||||:|:|.::.||||:||.|:.||:||..|.|||||:||||.|||:||.||||.|||.|||||
 Worm   438 SLPLDMGSWTSITELNLSTNQLKVLPEDIEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDLEE 502

  Fly   518 NRIEVLPHEIGLLHELQRLILQTNQITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESLENL 582
            |.:|.:|.|||.|..|.:|.:|:|:|..||||||:|.:|..|.:.||||..:|||||.|:||::|
 Worm   503 NELETVPTEIGFLQHLTKLWVQSNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSL 567

  Fly   583 YINQNPGLEKLPFELALCQNLKYLNIDKCPLSTIPPEIQAGGPSLVLQWLKMHSPYR 639
            |:|.|..|..|||||||||:|:.::|:..|||.|||||.|||||||:|:|||..|||
 Worm   568 YLNDNSSLHNLPFELALCQSLEIMSIENSPLSQIPPEITAGGPSLVIQYLKMQGPYR 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sur-8NP_001262665.1 leucine-rich repeat 163..184 CDD:275380 12/20 (60%)
leucine-rich repeat 185..207 CDD:275380 14/21 (67%)
LRR_RI 204..401 CDD:238064 102/196 (52%)
LRR_8 207..264 CDD:290566 33/56 (59%)
leucine-rich repeat 208..230 CDD:275380 12/21 (57%)
leucine-rich repeat 231..253 CDD:275380 14/21 (67%)
LRR_8 252..310 CDD:290566 32/57 (56%)
leucine-rich repeat 254..276 CDD:275380 11/21 (52%)
leucine-rich repeat 277..299 CDD:275380 16/21 (76%)
LRR_8 299..356 CDD:290566 31/56 (55%)
leucine-rich repeat 300..322 CDD:275380 11/21 (52%)
leucine-rich repeat 323..345 CDD:275380 13/21 (62%)
LRR_8 344..403 CDD:290566 24/58 (41%)
leucine-rich repeat 346..368 CDD:275380 10/21 (48%)
leucine-rich repeat 369..392 CDD:275380 9/22 (41%)
LRR_RI <379..566 CDD:238064 105/186 (56%)
leucine-rich repeat 417..440 CDD:275380 14/22 (64%)
leucine-rich repeat 441..486 CDD:275380 27/44 (61%)
LRR_8 463..520 CDD:290566 39/56 (70%)
leucine-rich repeat 487..507 CDD:275380 15/19 (79%)
leucine-rich repeat 510..532 CDD:275380 14/21 (67%)
LRR_8 532..588 CDD:290566 29/55 (53%)
leucine-rich repeat 556..578 CDD:275380 12/21 (57%)
leucine-rich repeat 603..626 CDD:275380 13/22 (59%)
soc-2NP_001293758.1 leucine-rich repeat 148..169 CDD:275380 12/20 (60%)
leucine-rich repeat 170..192 CDD:275380 14/21 (67%)
LRR_RI <192..274 CDD:238064 46/81 (57%)
LRR_8 192..249 CDD:290566 33/56 (59%)
leucine-rich repeat 193..215 CDD:275380 12/21 (57%)
leucine-rich repeat 216..238 CDD:275380 14/21 (67%)
LRR_8 238..318 CDD:290566 46/79 (58%)
leucine-rich repeat 239..261 CDD:275380 11/21 (52%)
leucine-rich repeat 262..284 CDD:275380 16/21 (76%)
leucine-rich repeat 285..307 CDD:275380 11/21 (52%)
leucine-rich repeat 308..330 CDD:275380 13/21 (62%)
LRR_RI 327..553 CDD:238064 123/225 (55%)
leucine-rich repeat 331..353 CDD:275380 10/21 (48%)
leucine-rich repeat 354..375 CDD:275380 8/20 (40%)
leucine-rich repeat 402..425 CDD:275380 14/22 (64%)
leucine-rich repeat 449..471 CDD:275380 12/21 (57%)
leucine-rich repeat 472..517 CDD:275380 32/44 (73%)
LRR_8 517..572 CDD:290566 29/54 (54%)
leucine-rich repeat 541..563 CDD:275380 12/21 (57%)
leucine-rich repeat 588..611 CDD:275380 13/22 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166943
Domainoid 1 1.000 173 1.000 Domainoid score I2220
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7219
Inparanoid 1 1.050 555 1.000 Inparanoid score I602
Isobase 1 0.950 - 1 Normalized mean entropy S1710
OMA 1 1.010 - - QHG54393
OrthoDB 1 1.010 - - D234290at33208
OrthoFinder 1 1.000 - - FOG0007307
OrthoInspector 1 1.000 - - oto18891
orthoMCL 1 0.900 - - OOG6_101852
Panther 1 1.100 - - LDO PTHR45752
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R9772
SonicParanoid 1 1.000 - - X5412
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.890

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