DRSC/TRiP Functional Genomics Resources

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Protein Alignment sds22 and Lrriq1

DIOPT Version :10

Sequence 1:NP_650619.1 Gene:sds22 / 42091 FlyBaseID:FBgn0028992 Length:326 Species:Drosophila melanogaster
Sequence 2:XP_011241894.1 Gene:Lrriq1 / 74978 MGIID:1922228 Length:1717 Species:Mus musculus


Alignment Length:358 Identity:85/358 - (23%)
Similarity:161/358 - (44%) Gaps:59/358 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 TVSGIQVIPAEDVASIEDIITIDP--DCYELDLNHRRIEK-----------LENFEPLTRIERLF 67
            :||.:.|:.:.:...:..:.|..|  :.:|.: .|::|.|           :...:|...::  :
Mouse   741 SVSQLTVLSSVEERRLAWVKTFKPWAEIFEQN-QHKKIVKKRRLVKCPPNTMPPLDPSAILQ--Y 802

  Fly    68 LRWNLIKKIENLS-------SLKTLIE------LELYDNQITKIENLDDLPHLEVLDISFNRLTK 119
            ..|..:|::..::       ||.||.|      |.|....:|.::.|.....|:.:|...|.:..
Mouse   803 GPWKSLKQVPVITFQGLPGCSLSTLAECSNLQILSLRRCGLTSLQGLSHCTRLKYIDAQENHIEA 867

  Fly   120 I--ENLDKLVKLEKVYFVSNRITQIENLDMLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNK 182
            |  |||:   .|..|...:|.:|.|...|..|||..|||..||:.:|..:|.|..|::|.:..|:
Mouse   868 ISCENLE---NLSVVLLNNNLLTSIHGFDGCTNLQSLELSHNKITRISGLESLKYLQELTVDHNQ 929

  Fly   183 IAKIENL-------------------DTLVN---LEILSLQANRIVKIENLEKLANLRELYVSEN 225
            :...:.|                   |.:.|   |:|:.||.|.:.:..:|.....||||::.:|
Mouse   930 LISTKGLCEAPTIVYLDCSHNHLTGIDGIGNCGLLQIIKLQGNYLREPPSLRNHVLLRELHLDDN 994

  Fly   226 GVETIENLSE--NTKLETLDLAKNRLKGIANLEKLELLEELWLNHNGVDDWKDIEL-LKVNKALQ 287
            .:.::|.||.  ...|:.|.:::|.|..|..|..|..||:|.:::|.:.|..::.. .....:|:
Mouse   995 SISSVEGLSSCWLPLLQYLSISQNSLATIVPLFHLVSLEKLDVSNNCLSDLTNVMCWFNACYSLR 1059

  Fly   288 TIYLEYNPLAKDVRYRSKLRDILPQLQKIDATL 320
            .:.|..||:.:::.:|..:...||.|:.::..:
Mouse  1060 ELCLTGNPVLQEINWRDSILKTLPALRVLNGDM 1092

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sds22NP_650619.1 leucine-rich repeat 43..62 CDD:275380 5/29 (17%)
PPP1R42 44..208 CDD:455733 50/211 (24%)
leucine-rich repeat 63..84 CDD:275380 4/27 (15%)
leucine-rich repeat 85..106 CDD:275380 6/26 (23%)
leucine-rich repeat 107..128 CDD:275380 7/22 (32%)
leucine-rich repeat 129..150 CDD:275380 6/20 (30%)
PPP1R42 132..317 CDD:455733 56/209 (27%)
leucine-rich repeat 151..172 CDD:275380 9/20 (45%)
leucine-rich repeat 173..194 CDD:275380 5/39 (13%)
leucine-rich repeat 195..216 CDD:275380 6/20 (30%)
leucine-rich repeat 217..238 CDD:275380 8/22 (36%)
Lrriq1XP_011241894.1 PTZ00121 <173..657 CDD:173412
leucine-rich repeat 833..854 CDD:275380 4/20 (20%)
PPP1R42 836..1090 CDD:455733 68/256 (27%)
leucine-rich repeat 855..875 CDD:275380 7/22 (32%)
leucine-rich repeat 876..897 CDD:275380 6/20 (30%)
leucine-rich repeat 898..919 CDD:275380 9/20 (45%)
leucine-rich repeat 920..941 CDD:275380 4/20 (20%)
leucine-rich repeat 942..963 CDD:275380 2/20 (10%)
leucine-rich repeat 964..982 CDD:275380 6/17 (35%)
leucine-rich repeat 986..1009 CDD:275380 8/22 (36%)
leucine-rich repeat 1010..1031 CDD:275380 7/20 (35%)
leucine-rich repeat 1058..1084 CDD:275380 6/25 (24%)
IQCD 1337..1365 CDD:467745
Blue background indicates that the domain is not in the aligned region.

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