DRSC/TRiP Functional Genomics Resources

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Protein Alignment sds22 and lrrcc1

DIOPT Version :10

Sequence 1:NP_650619.1 Gene:sds22 / 42091 FlyBaseID:FBgn0028992 Length:326 Species:Drosophila melanogaster
Sequence 2:XP_690381.2 Gene:lrrcc1 / 561887 ZFINID:ZDB-GENE-041111-207 Length:997 Species:Danio rerio


Alignment Length:247 Identity:71/247 - (28%)
Similarity:113/247 - (45%) Gaps:57/247 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 LIKKIENLSSL------KTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKIENLDKLVKLE 130
            ||.|  ::|||      .::..|.|:.|::||||.|....|:..||:|.|.:.:||.|..|..|.
Zfish     8 LIDK--DISSLLEVSLNPSISSLNLHCNRLTKIEGLTTAWHIRHLDLSSNHICRIEGLASLSSLR 70

  Fly   131 KVYFVSNRITQIENLDMLTNLTMLELGDNKLKKIENIEMLVNLRQLFL-GKNKIAKIENLDTLVN 194
            .:....|.||::|.||.|||||.|.|..|::..:..:        |:| |.|           ..
Zfish    71 TLNLSCNLITKVEGLDGLTNLTRLNLAYNQINDLTGL--------LYLHGAN-----------YK 116

  Fly   195 LEILSLQANRIVKIENLEK----LANLRELYVSENGVE------------TIENLSENTKLETLD 243
            |:.|.|.:||:..:.:|.:    |.||:.:.:|::|.|            .::.|.:.|.|:.:|
Zfish   117 LKYLQLHSNRLDSMNHLLQCMVGLQNLKYITLSKDGAENPVCKMIGYREMVLQCLHQVTTLDGVD 181

  Fly   244 -------LAKNRLKGIANLEKLELLEELWLNHNGVDDWKDIELLKVNKALQT 288
                   ||::....:..||  :.||.|..:...|:.    ||.|.:..|.|
Zfish   182 RMGNTCPLAEDSPMDVPGLE--DFLEFLISSDTSVNG----ELAKSDAPLTT 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sds22NP_650619.1 leucine-rich repeat 43..62 CDD:275380
PPP1R42 44..208 CDD:455733 47/142 (33%)
leucine-rich repeat 63..84 CDD:275380 6/17 (35%)
leucine-rich repeat 85..106 CDD:275380 8/20 (40%)
leucine-rich repeat 107..128 CDD:275380 8/20 (40%)
leucine-rich repeat 129..150 CDD:275380 8/20 (40%)
PPP1R42 132..317 CDD:455733 47/181 (26%)
leucine-rich repeat 151..172 CDD:275380 5/20 (25%)
leucine-rich repeat 173..194 CDD:275380 4/21 (19%)
leucine-rich repeat 195..216 CDD:275380 7/24 (29%)
leucine-rich repeat 217..238 CDD:275380 5/32 (16%)
lrrcc1XP_690381.2 PPP1R42 6..181 CDD:455733 57/193 (30%)
leucine-rich repeat 25..46 CDD:275378 8/20 (40%)
leucine-rich repeat 47..68 CDD:275378 8/20 (40%)
leucine-rich repeat 69..90 CDD:275378 8/20 (40%)
leucine-rich repeat 91..116 CDD:275378 9/43 (21%)
leucine-rich repeat 117..129 CDD:275378 5/11 (45%)
PTZ00121 <353..921 CDD:173412
Blue background indicates that the domain is not in the aligned region.

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