DRSC/TRiP Functional Genomics Resources

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Protein Alignment sds22 and lrrc61

DIOPT Version :9

Sequence 1:NP_650619.1 Gene:sds22 / 42091 FlyBaseID:FBgn0028992 Length:326 Species:Drosophila melanogaster
Sequence 2:NP_001036219.1 Gene:lrrc61 / 553439 ZFINID:ZDB-GENE-060616-245 Length:260 Species:Danio rerio


Alignment Length:205 Identity:51/205 - (24%)
Similarity:77/205 - (37%) Gaps:68/205 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 LEKVYFVSNRITQIENLDMLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKIENLDTLV 193
            ||.:.|:.           |.||.:.:||        .|...:||.:|.|..|.|..:..|..|.
Zfish    29 LESILFLK-----------LKNLGIYDLG--------CIGECINLERLDLSGNNITNLGPLSPLR 74

  Fly   194 NLEILSLQANRIVKIENLEKLANLRELYVSENGVETIENLSENTKLETLDLAKNRLKGIANLEKL 258
            .|..|:|.||||..:|.|....:|:.|.|:.|.:.:::||             :.||.:..||.:
Zfish    75 RLLSLNLSANRISNLEPLATCESLQSLNVAGNVISSVDNL-------------HSLKSLRRLENI 126

  Fly   259 ELLEELWLNHNGVDDWKDIELLKVNKALQTIYLEYNPLAKDVRYRSKLRDILPQLQKIDA----- 318
            .|              ||           ..|...||:.|:..||..:.:|.|.::.:|.     
Zfish   127 RL--------------KD-----------NTYNFTNPVCKNPSYRPLILEIFPNMKVLDGERVVG 166

  Fly   319 ------TLCK 322
                  .|||
Zfish   167 RGSDLYQLCK 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sds22NP_650619.1 leucine-rich repeat 43..62 CDD:275380
LRR_8 61..117 CDD:290566
leucine-rich repeat 63..84 CDD:275380
LRR_4 83..125 CDD:289563
leucine-rich repeat 85..106 CDD:275380
LRR_8 105..183 CDD:290566 14/53 (26%)
leucine-rich repeat 107..128 CDD:275380
LRR_4 128..168 CDD:289563 8/38 (21%)
leucine-rich repeat 129..150 CDD:275380 4/20 (20%)
LRR_4 149..189 CDD:289563 11/39 (28%)
leucine-rich repeat 151..172 CDD:275380 4/20 (20%)
leucine-rich repeat 173..194 CDD:275380 7/20 (35%)
LRR_8 194..249 CDD:290566 15/54 (28%)
LRR_4 194..235 CDD:289563 15/40 (38%)
leucine-rich repeat 195..216 CDD:275380 9/20 (45%)
leucine-rich repeat 217..238 CDD:275380 6/20 (30%)
lrrc61NP_001036219.1 leucine-rich repeat 54..81 CDD:275378 9/26 (35%)
leucine-rich repeat 98..122 CDD:275378 8/36 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0531
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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