DRSC/TRiP Functional Genomics Resources

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Protein Alignment sds22 and lrrc23

DIOPT Version :9

Sequence 1:NP_650619.1 Gene:sds22 / 42091 FlyBaseID:FBgn0028992 Length:326 Species:Drosophila melanogaster
Sequence 2:NP_001006054.1 Gene:lrrc23 / 450033 ZFINID:ZDB-GENE-041010-153 Length:326 Species:Danio rerio


Alignment Length:238 Identity:71/238 - (29%)
Similarity:116/238 - (48%) Gaps:8/238 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 IELELYDNQITKIENLDDLPHLEVLDISFNRLTKIENLDKLVKLEKVYFVSNRITQIEN--LDML 148
            :.|:|.:..:|.:..|....||..||:|.|.|:....|..|.:|..|...||.:...|.  ...|
Zfish    63 VRLDLKNKGLTDLALLSSFIHLRYLDLSSNHLSDFSPLAGLTQLLWVKGDSNLLQGFEGQPFGQL 127

  Fly   149 TNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKIENLD--TLVNLEILSLQANRIVKIENL 211
            |.|..|.:..|:|..:..:.... |..|.|..|.|..::.||  .|.||..|.|:.|.:...:.:
Zfish   128 TFLQWLSIASNRLFDVTGLGGPA-LETLNLTGNGIQTMQGLDHPNLTNLVTLELRGNCLETTDGI 191

  Fly   212 EKLANLRELYVSENGVETIENLSENTKLETLDLAKNRLKGIANLE-KLELLEELWLNHNGVDDWK 275
             .|.|||.||:::|.::.:|.|.:..:|.||.|..|:|:.:..|. .::.||.|.:..|.:...:
Zfish   192 -YLPNLRHLYLAQNNIKKLEGLEKLERLITLHLRHNQLETLDGLSASMKCLEYLNVRGNLISSMR 255

  Fly   276 DIE-LLKVNKALQTIYLEYNPLAKDVRYRSKLRDILPQLQKID 317
            .:: |..|.:.|:.:.|..||:||...||..:...||.|:::|
Zfish   256 ALQTLASVGQTLKALVLLDNPIAKTDDYRLYVISQLPHLERVD 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sds22NP_650619.1 leucine-rich repeat 43..62 CDD:275380
LRR_8 61..117 CDD:290566 10/30 (33%)
leucine-rich repeat 63..84 CDD:275380
LRR_4 83..125 CDD:289563 12/38 (32%)
leucine-rich repeat 85..106 CDD:275380 4/19 (21%)
LRR_8 105..183 CDD:290566 24/79 (30%)
leucine-rich repeat 107..128 CDD:275380 8/20 (40%)
LRR_4 128..168 CDD:289563 11/41 (27%)
leucine-rich repeat 129..150 CDD:275380 6/22 (27%)
LRR_4 149..189 CDD:289563 10/39 (26%)
leucine-rich repeat 151..172 CDD:275380 4/20 (20%)
leucine-rich repeat 173..194 CDD:275380 8/22 (36%)
LRR_8 194..249 CDD:290566 19/54 (35%)
LRR_4 194..235 CDD:289563 14/40 (35%)
leucine-rich repeat 195..216 CDD:275380 5/20 (25%)
leucine-rich repeat 217..238 CDD:275380 7/20 (35%)
lrrc23NP_001006054.1 leucine-rich repeat 64..83 CDD:275380 4/18 (22%)
LRR_4 65..102 CDD:289563 12/36 (33%)
LRR_8 83..140 CDD:290566 19/56 (34%)
leucine-rich repeat 84..105 CDD:275380 8/20 (40%)
leucine-rich repeat 106..129 CDD:275380 6/22 (27%)
leucine-rich repeat 130..150 CDD:275380 4/19 (21%)
LRR_8 149..206 CDD:290566 20/58 (34%)
leucine-rich repeat 151..174 CDD:275380 8/22 (36%)
leucine-rich repeat 175..195 CDD:275380 5/20 (25%)
LRR_8 194..251 CDD:290566 19/56 (34%)
LRR_4 194..235 CDD:289563 14/40 (35%)
leucine-rich repeat 196..217 CDD:275380 7/20 (35%)
LRR_4 216..258 CDD:289563 11/41 (27%)
leucine-rich repeat 218..240 CDD:275380 7/21 (33%)
leucine-rich repeat 241..262 CDD:275380 5/20 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0531
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54194
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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