DRSC/TRiP Functional Genomics Resources

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Protein Alignment sds22 and Lrrc43

DIOPT Version :10

Sequence 1:NP_650619.1 Gene:sds22 / 42091 FlyBaseID:FBgn0028992 Length:326 Species:Drosophila melanogaster
Sequence 2:NP_001028633.1 Gene:Lrrc43 / 381741 MGIID:2685907 Length:667 Species:Mus musculus


Alignment Length:355 Identity:73/355 - (20%)
Similarity:132/355 - (37%) Gaps:117/355 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 RIERLFLRWNLIKKIENLSSLKTLIELELYDNQITKIENLDDL--PHLEVLDISFNRLTKIENLD 124
            ::|.|.|..|.|::|:..:...||..||||.|.|..:|.|...  |.|:.|.:..|:|       
Mouse   148 KLEELVLSANKIEEIDANNLPPTLKVLELYGNLIASMECLCSAPPPRLQHLGLGHNKL------- 205

  Fly   125 KLVKLEKVYFVSNRITQIENLDMLTNLTMLELGDNKLKKIEN----IEMLVNLRQLFLGKNKIAK 185
             |..||.:|..|:...|:.:||         ||.|.|..::|    :..|.:||.|.|..|.::.
Mouse   206 -LGPLESLYVTSHNWPQLVSLD---------LGFNNLTDLQNMILGLSTLRHLRLLVLQGNPLSL 260

  Fly   186 IE-----NLDTLVNL-----------------------EILSLQANRIVKIENLEKLANLREL-- 220
            :.     .:|:|.:|                       ::|:.:|..:|.|.|:..:.:...|  
Mouse   261 VPYYRGFTIDSLAHLCVLDDITVSPNEKHQFRGLNIHGDLLAREAQFVVTIGNVRGVLDSSILDP 325

  Fly   221 -------YVSENGVETIENLSENTKLETLDLAKNRLKGIANLEKLE-LLEELWLNHNGVDDWKDI 277
                   ::|.:...|.:.:.:.      |:.:| :.|:......: :|:|:..:.:|.|:....
Mouse   326 EPGPDGPFISYSYYVTYDFVEDE------DMERN-VSGLVEATHHDSVLDEIDKHFSGTDEEDQQ 383

  Fly   278 E----------------------------------------------LLKVNKALQTIYLEYNPL 296
            |                                              :.:|:.:..:|.:...||
Mouse   384 EDPLDGRHRHRGRQRFHPGSTEEMSKELSEFIAKEMSQMAEGSVESGITEVDWSETSISIHSAPL 448

  Fly   297 AKDVRYRSKLRDILPQLQKIDATLCKVPGT 326
            .:.:....:|..:.|   |||..||..|||
Mouse   449 PQSIDSSEELAKLRP---KIDIQLCPSPGT 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sds22NP_650619.1 leucine-rich repeat 43..62 CDD:275380 73/355 (21%)
PPP1R42 44..208 CDD:455733 46/179 (26%)
leucine-rich repeat 63..84 CDD:275380 6/20 (30%)
leucine-rich repeat 85..106 CDD:275380 9/22 (41%)
leucine-rich repeat 107..128 CDD:275380 5/20 (25%)
leucine-rich repeat 129..150 CDD:275380 7/20 (35%)
PPP1R42 132..317 CDD:455733 42/272 (15%)
leucine-rich repeat 151..172 CDD:275380 6/24 (25%)
leucine-rich repeat 173..194 CDD:275380 7/25 (28%)
leucine-rich repeat 195..216 CDD:275380 6/43 (14%)
leucine-rich repeat 217..238 CDD:275380 3/29 (10%)
Lrrc43NP_001028633.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24
LRR 1 148..169 6/20 (30%)
PPP1R42 154..291 CDD:455733 41/153 (27%)
LRR 2 170..191 10/20 (50%)
leucine-rich repeat 171..194 CDD:275378 9/22 (41%)
LRR 3 194..213 7/26 (27%)
leucine-rich repeat 195..221 CDD:275378 9/33 (27%)
LRR 4 221..242 8/29 (28%)
leucine-rich repeat 222..247 CDD:275378 8/33 (24%)
leucine-rich repeat 248..259 CDD:275378 5/10 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 374..407 3/32 (9%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 533..570
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 616..640
Blue background indicates that the domain is not in the aligned region.

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