DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sds22 and B0524.3

DIOPT Version :9

Sequence 1:NP_650619.1 Gene:sds22 / 42091 FlyBaseID:FBgn0028992 Length:326 Species:Drosophila melanogaster
Sequence 2:NP_497472.3 Gene:B0524.3 / 182025 WormBaseID:WBGene00015242 Length:549 Species:Caenorhabditis elegans


Alignment Length:377 Identity:76/377 - (20%)
Similarity:146/377 - (38%) Gaps:111/377 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 IEDIITIDP-DCYELDLNHRRI--EKLENFEPLTRIE----RLFLRWNLIKKIENLS-SLKTLIE 87
            |.|:|.:|| ...|:|.:..::  |.|...:.:.|.|    ||   |:|....|... |.:|.::
 Worm    49 ISDLIGVDPLKLAEIDKDQVKVVAENLNKLDQIPRDEANEDRL---WDLGWMAEEAKFSPETSLD 110

  Fly    88 L---ELYDNQITKIENLDD-----LPHLEVLDIS---------------------FNRLTKIENL 123
            |   :||...:..|.|:.|     ....|.||:|                     |..|..::|:
 Worm   111 LSKKDLYLKAVNSIINMKDQWRKVKTFAETLDLSLDLYPCFDISRSTVLRDINATFPHLQSVDNI 175

  Fly   124 DKLV------------KLEKVYFVSN--RITQIENLDMLTNLTMLELGDNKLKKIENIEMLVNLR 174
            ..|.            |||::.:..|  |:.....:........||..|.|.:.|:|:.      
 Worm   176 QHLYPTGPSDWSKVKSKLEQLEYTRNLSRVLPALQVSSARPPRPLEHKDLKSRWIKNVV------ 234

  Fly   175 QLFLGKNKIAKIENLDTLVNLEILSLQANRIV---KIENLEKLANLRELYVSENGVETIENLSEN 236
                 |.:..::|.  .|.:||.:|.|.:.::   .|:||.:..:..::.:   |:.::..|..|
 Worm   235 -----KGQAHRLEK--ALASLEKVSWQVSSLLGLPAIQNLPRFNSNAQILL---GLNSLTPLISN 289

  Fly   237 TKLETLDLAKNRLKG--------IANLEKL-ELLEELWLNHNGVDDW----------------KD 276
            .....:||...:.:|        :.::||| ::::.|   ...::.|                .|
 Worm   290 IGKIQVDLTFTKHEGLHRHFIDVLLDMEKLADMIDAL---QKAMEFWDSKRFFGNQDQITSHPPD 351

  Fly   277 IELL---KVNKALQTIYLEYNPLAKDVRYRSKLRDILPQLQKIDATLCKVPG 325
            :::|   .::...:.| ::|.|..:      :....:|:..||.|:|.|:.|
 Worm   352 LKILTTESIDSVAERI-IKYFPSFE------QFTGEMPKFLKIVASLKKING 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sds22NP_650619.1 leucine-rich repeat 43..62 CDD:275380 4/20 (20%)
LRR_8 61..117 CDD:290566 20/89 (22%)
leucine-rich repeat 63..84 CDD:275380 7/25 (28%)
LRR_4 83..125 CDD:289563 14/70 (20%)
leucine-rich repeat 85..106 CDD:275380 6/28 (21%)
LRR_8 105..183 CDD:290566 20/112 (18%)
leucine-rich repeat 107..128 CDD:275380 8/53 (15%)
LRR_4 128..168 CDD:289563 11/41 (27%)
leucine-rich repeat 129..150 CDD:275380 4/22 (18%)
LRR_4 149..189 CDD:289563 8/39 (21%)
leucine-rich repeat 151..172 CDD:275380 6/20 (30%)
leucine-rich repeat 173..194 CDD:275380 3/20 (15%)
LRR_8 194..249 CDD:290566 12/57 (21%)
LRR_4 194..235 CDD:289563 9/43 (21%)
leucine-rich repeat 195..216 CDD:275380 7/23 (30%)
leucine-rich repeat 217..238 CDD:275380 3/20 (15%)
B0524.3NP_497472.3 WSN 16..78 CDD:366979 9/28 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
10.960

Return to query results.
Submit another query.