DRSC/TRiP Functional Genomics Resources

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Protein Alignment sds22 and sds-22

DIOPT Version :9

Sequence 1:NP_650619.1 Gene:sds22 / 42091 FlyBaseID:FBgn0028992 Length:326 Species:Drosophila melanogaster
Sequence 2:NP_495653.1 Gene:sds-22 / 174266 WormBaseID:WBGene00011637 Length:326 Species:Caenorhabditis elegans


Alignment Length:328 Identity:152/328 - (46%)
Similarity:214/328 - (65%) Gaps:15/328 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 MNEPEAAKTVSGIQVIPAE-DVASIE-------DIITIDPDCYELDLNHRRIEKLENFEPLTRIE 64
            |:..::|:.|    |:|.| |..|.|       |:.|.|.|..|:||.|.|.:.:.:.....:||
 Worm     1 MSNDKSAEVV----VLPRENDEESKEPVLKNQFDLSTFDIDSPEIDLTHTRADHIPDLTGFPKIE 61

  Fly    65 RLFLRWNLIKKIE-NLSSLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKIENLDKLVK 128
            .|.:|.||:..|. .:|||.||..|:||:||:|:|.:|:.|.:|..||:|:||:.:|..||||.|
 Worm    62 ELRMRNNLLVSISPTISSLVTLTSLDLYENQLTEISHLESLVNLVSLDLSYNRIRQINGLDKLTK 126

  Fly   129 LEKVYFVSNRITQIENLDMLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKIENLDTLV 193
            ||.:|.|||:|.:||||:.||.|.:||||||::||||||..||||.:||:|||||.::|.::||.
 Worm   127 LETLYLVSNKIEKIENLEALTQLKLLELGDNRIKKIENIGHLVNLDELFIGKNKIRQLEGVETLQ 191

  Fly   194 NLEILSLQANRIVKIENLEKLANLRELYVSENGVETIENLSENTKLETLDLAKNRLKGIANLEKL 258
            .|.:|||..||||||||:|:|.||:|||:|:.|::.|..:...|.|..||:|.|.:|..:.:|:|
 Worm   192 KLSVLSLPGNRIVKIENVEQLNNLKELYLSDQGLQDIHGVEPLTNLLLLDVANNEIKTFSGVERL 256

  Fly   259 ELLEELWLNHNGVDDWKDIELLKVNKALQTIYLEYNPL-AKDV-RYRSKLRDILPQLQKIDATLC 321
            |.|.:.|.|.|.|:.:.:||.|...|.|||:|||.||. ..|. :||.|:...|.|:.:||||.|
 Worm   257 ESLNDFWANDNKVESFSEIEQLSKLKGLQTVYLERNPFYFNDTNQYRRKVMMTLTQVTQIDATTC 321

  Fly   322 KVP 324
            :.|
 Worm   322 RKP 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sds22NP_650619.1 leucine-rich repeat 43..62 CDD:275380 5/18 (28%)
LRR_8 61..117 CDD:290566 26/56 (46%)
leucine-rich repeat 63..84 CDD:275380 10/21 (48%)
LRR_4 83..125 CDD:289563 19/41 (46%)
leucine-rich repeat 85..106 CDD:275380 10/20 (50%)
LRR_8 105..183 CDD:290566 47/77 (61%)
leucine-rich repeat 107..128 CDD:275380 11/20 (55%)
LRR_4 128..168 CDD:289563 26/39 (67%)
leucine-rich repeat 129..150 CDD:275380 12/20 (60%)
LRR_4 149..189 CDD:289563 26/39 (67%)
leucine-rich repeat 151..172 CDD:275380 14/20 (70%)
leucine-rich repeat 173..194 CDD:275380 11/20 (55%)
LRR_8 194..249 CDD:290566 28/54 (52%)
LRR_4 194..235 CDD:289563 22/40 (55%)
leucine-rich repeat 195..216 CDD:275380 14/20 (70%)
leucine-rich repeat 217..238 CDD:275380 7/20 (35%)
sds-22NP_495653.1 leucine-rich repeat 40..59 CDD:275380 5/18 (28%)
leucine-rich repeat 60..82 CDD:275380 10/21 (48%)
LRR_8 82..137 CDD:290566 29/54 (54%)
LRR_4 83..123 CDD:289563 18/39 (46%)
leucine-rich repeat 83..104 CDD:275380 10/20 (50%)
LRR_4 104..144 CDD:289563 22/39 (56%)
leucine-rich repeat 105..126 CDD:275380 11/20 (55%)
LRR_8 125..181 CDD:290566 36/55 (65%)
LRR_4 125..167 CDD:289563 27/41 (66%)
leucine-rich repeat 127..148 CDD:275380 12/20 (60%)
leucine-rich repeat 149..170 CDD:275380 14/20 (70%)
leucine-rich repeat 171..192 CDD:275380 11/20 (55%)
leucine-rich repeat 193..214 CDD:275380 14/20 (70%)
leucine-rich repeat 215..236 CDD:275380 7/20 (35%)
leucine-rich repeat 256..283 CDD:275380 10/26 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159134
Domainoid 1 1.000 41 1.000 Domainoid score I8530
eggNOG 1 0.900 - - E2759_KOG0531
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H2032
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54194
OrthoDB 1 1.010 - - D456546at33208
OrthoFinder 1 1.000 - - FOG0003823
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102267
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1301
SonicParanoid 1 1.000 - - X3785
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.690

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