DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sds22 and lrrc56

DIOPT Version :9

Sequence 1:NP_650619.1 Gene:sds22 / 42091 FlyBaseID:FBgn0028992 Length:326 Species:Drosophila melanogaster
Sequence 2:XP_012817843.1 Gene:lrrc56 / 100496856 XenbaseID:XB-GENE-6045468 Length:622 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sds22NP_650619.1 leucine-rich repeat 43..62 CDD:275380
LRR_8 61..117 CDD:290566
leucine-rich repeat 63..84 CDD:275380
LRR_4 83..125 CDD:289563
leucine-rich repeat 85..106 CDD:275380
LRR_8 105..183 CDD:290566
leucine-rich repeat 107..128 CDD:275380
LRR_4 128..168 CDD:289563
leucine-rich repeat 129..150 CDD:275380
LRR_4 149..189 CDD:289563
leucine-rich repeat 151..172 CDD:275380
leucine-rich repeat 173..194 CDD:275380
LRR_8 194..249 CDD:290566
LRR_4 194..235 CDD:289563
leucine-rich repeat 195..216 CDD:275380
leucine-rich repeat 217..238 CDD:275380
lrrc56XP_012817843.1 LRR_4 89..132 CDD:289563
leucine-rich repeat 91..113 CDD:275380
LRR_4 113..153 CDD:289563
leucine-rich repeat 114..135 CDD:275380
LRR_4 134..175 CDD:289563
LRR_8 135..193 CDD:290566
leucine-rich repeat 136..157 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.