DRSC/TRiP Functional Genomics Resources

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Protein Alignment sds22 and drc3

DIOPT Version :9

Sequence 1:NP_650619.1 Gene:sds22 / 42091 FlyBaseID:FBgn0028992 Length:326 Species:Drosophila melanogaster
Sequence 2:NP_001123832.1 Gene:drc3 / 100170587 XenbaseID:XB-GENE-1003585 Length:522 Species:Xenopus tropicalis


Alignment Length:410 Identity:105/410 - (25%)
Similarity:173/410 - (42%) Gaps:119/410 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 VASIEDIITIDPDCYELDLNHR------------RIEKLENFEPLTRIERLFLRWNLIKKIENLS 80
            ::|:.|  |::|:..:.|:...            ||.|||..: ...:..|.|.:..|.||:||.
 Frog     1 MSSLYD--TMEPNVIDDDMLRNAVEEQGPKEEAGRIAKLEGID-FKHVSSLRLDFKNILKIDNLW 62

  Fly    81 SLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKIENLDKLVKLEKVYFVSNRITQIENL 145
            ...:|.:|:|.:|.|.||..||.|.||..||:|||.:..||.|..|.|||.:...:|||:.:||:
 Frog    63 QFHSLTKLQLDNNIIEKISGLDTLVHLVWLDLSFNNIEVIEGLKALTKLEDLSLYNNRISVVENM 127

  Fly   146 DMLTNLTMLELGDNKLKKIENIEML---VNLRQLFLGKNKIAKIE--------NLDTLVNLEILS 199
            |.|:||.:|.||:|.|..:||:..|   ..||.|.|..|.:::.:        :|..|..|:...
 Frog   128 DTLSNLQVLSLGNNNLTSLENLIYLRKFKQLRTLSLAGNPLSEDDQYKLFIAAHLPNLAYLDFRL 192

  Fly   200 LQAN--------------RIVKIENLEKL------ANLREL------YVSE-NGVETIENL---- 233
            |..|              .|...||.||.      ...|||      ||.. ||....|::    
 Frog   193 LNENIREMATMKYQYSIDDITHNENQEKRKQEEEEQKQRELDLHKAAYVENLNGPFLFESMYADD 257

  Fly   234 SENTKL-------ETLD--------------------------------------LAKNRLKGIA 253
            ::.|||       |.:|                                      :.:|:.:|..
 Frog   258 ADGTKLSGLPGVAELMDSYRSKCIEICQNIFEYGMKQHEKREAEAFEFNECMQEAIRENQEQGAK 322

  Fly   254 NLEKL-----ELLEELWLNHNGVDDWKDIELLK----VNK---ALQTIYLEYNPLAKDV--RYRS 304
            .:::|     |:|.|  |:.:|..|:.|:::.:    :||   :|.|:.|:.....:::  .|..
 Frog   323 KIQELTEKNSEILNE--LSQSGNQDFLDLKISQYIDDINKLLDSLMTLELQLVDQTEEIIKEYER 385

  Fly   305 KLRDILPQ-LQKIDATLCKV 323
            .:.|::.. |:.:...:.:|
 Frog   386 NVSDMVSAFLETVQGLMAQV 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sds22NP_650619.1 leucine-rich repeat 43..62 CDD:275380 6/30 (20%)
LRR_8 61..117 CDD:290566 24/55 (44%)
leucine-rich repeat 63..84 CDD:275380 7/20 (35%)
LRR_4 83..125 CDD:289563 20/41 (49%)
leucine-rich repeat 85..106 CDD:275380 10/20 (50%)
LRR_8 105..183 CDD:290566 36/80 (45%)
leucine-rich repeat 107..128 CDD:275380 10/20 (50%)
LRR_4 128..168 CDD:289563 19/39 (49%)
leucine-rich repeat 129..150 CDD:275380 9/20 (45%)
LRR_4 149..189 CDD:289563 15/50 (30%)
leucine-rich repeat 151..172 CDD:275380 9/23 (39%)
leucine-rich repeat 173..194 CDD:275380 7/28 (25%)
LRR_8 194..249 CDD:290566 22/130 (17%)
LRR_4 194..235 CDD:289563 16/71 (23%)
leucine-rich repeat 195..216 CDD:275380 8/40 (20%)
leucine-rich repeat 217..238 CDD:275380 8/31 (26%)
drc3NP_001123832.1 leucine-rich repeat 47..66 CDD:275380 7/18 (39%)
LRR_RI <60..211 CDD:238064 53/150 (35%)
leucine-rich repeat 67..88 CDD:275378 10/20 (50%)
LRR_8 88..143 CDD:290566 27/54 (50%)
leucine-rich repeat 89..110 CDD:275378 10/20 (50%)
LRR_4 109..149 CDD:289563 18/39 (46%)
leucine-rich repeat 111..132 CDD:275378 9/20 (45%)
leucine-rich repeat 133..157 CDD:275378 9/23 (39%)
leucine-rich repeat 158..169 CDD:275378 5/10 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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