DRSC/TRiP Functional Genomics Resources

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Protein Alignment Brf and AT4G35540

DIOPT Version :9

Sequence 1:NP_001163636.1 Gene:Brf / 42087 FlyBaseID:FBgn0038499 Length:662 Species:Drosophila melanogaster
Sequence 2:NP_195279.1 Gene:AT4G35540 / 829706 AraportID:AT4G35540 Length:527 Species:Arabidopsis thaliana


Alignment Length:540 Identity:104/540 - (19%)
Similarity:173/540 - (32%) Gaps:177/540 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LKCRNCGSNEIEEDNARGDRVCMNCGSVLE----------------------------------- 34
            ::|:.|..:..|.|...|:..|..||::.|                                   
plant     1 MRCKRCNGSNFERDEDTGNSYCGGCGTLREYDNYEAQLGGIRGPQGTYIRVGTIGRGSVLDYKDK 65

  Fly    35 -----DSLIVSEVQFEEVGHGAAAIGQFVSAESSG------------GATNYGY----GK----- 73
                 ::||....:...:|:....|...:|..:.|            ||..|..    ||     
plant    66 KIYEANNLIEETTERLNLGNKTEVIKSMISKLTDGEFGQGEWFPILIGACCYAVVREEGKGVLSM 130

  Fly    74 ----FQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALN--------------------- 113
                ::||.........||:....:.|..::..|...:..|..|                     
plant   131 EEVAYEVGCDLHQLGPMIKRVVDHLDLELREFDLVGLFTKTVTNSPRLTDVDRDKKEKIIKQGTF 195

  Fly   114 FFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYEL---GRTYLKLSHAL 175
            ....||...|:.||:...:..|.:....:..|..   :.|.|:.:..|..|   ...|.:||..|
plant   196 LMNCALKWFLSTGRRPMPLVVAVLAFVVQVNGVK---VKIDDLAKDASVSLTTCKTRYKELSEKL 257

  Fly   176 CINIPSLDPCLYIMRFANRLQL---------GAKTHEVSMTALRIVQRMKKDCMHSGR---RPTG 228
                         ::.|..:.|         ....|..::.||...:.|||....:|:   |..|
plant   258 -------------VKVAEEVGLPWAKDVTVKNVLKHSGTLFALMEAKSMKKRKQGTGKELVRTDG 309

  Fly   229 LCGAALLI-------------AARMHDFSRTMLDVIGVVK---------IHESTLRKRLSEFAET 271
            .|...|::             .||....|| ..||.|..:         |.|:.|..:.:||.:.
plant   310 FCVEDLVMDCLSKESMYCYDDDARQDTMSR-YFDVEGERQLSLCNYDDNISENQLSTKYNEFEDR 373

  Fly   272 PSGGLTLEEFMTVDLEREQDPPSFKAARKKDRERIKD----MGEHELTE--LQKEIDAHLEKDLG 330
            ..|| ||       .:|.|........|:.....:..    .|:.||::  |.|::   ||||:|
plant   374 VCGG-TL-------AKRSQGSSQSMWQRRSVFGMVSTENWWKGKSELSKRLLLKDL---LEKDVG 427

  Fly   331 ---------KYSNSVYRQLTKGKG----LSPLSSPSTPNSSSEKDIELEESRQFIEQSNAE---- 378
                     |...:|.|:..|.|.    ::.:..||...|.....:|||.|:: ..:..:|    
plant   428 LEALPPSYIKGCVAVERRREKIKAAKLRINAIQHPSDNVSEGALSLELEHSKK-KRKKGSEIDWE 491

  Fly   379 --VIKELIAKNEDVKKSEPG 396
              ||:.|:..|.:.::.|.|
plant   492 DLVIQTLVLHNVNEEEIEKG 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BrfNP_001163636.1 TF_Zn_Ribbon 5..44 CDD:285471 11/78 (14%)
SUA7 6..270 CDD:224323 68/386 (18%)
CYCLIN 108..164 CDD:294043 12/76 (16%)
CYCLIN 183..268 CDD:238003 23/118 (19%)
BRF1 441..531 CDD:285040
AT4G35540NP_195279.1 SUA7 1..257 CDD:224323 42/258 (16%)
TF_Zn_Ribbon 1..>35 CDD:400527 9/33 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1405
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11618
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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