DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Brf and Brf1

DIOPT Version :9

Sequence 1:NP_001163636.1 Gene:Brf / 42087 FlyBaseID:FBgn0038499 Length:662 Species:Drosophila melanogaster
Sequence 2:NP_082469.2 Gene:Brf1 / 72308 MGIID:1919558 Length:676 Species:Mus musculus


Alignment Length:711 Identity:317/711 - (44%)
Similarity:422/711 - (59%) Gaps:91/711 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TGLKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQF-EEVGHGAAAIGQFVSAESSGGA 66
            ||..||.||..:||.|.||||.||..|||||||::||||||| |..|.|::|:|||||.:.:|..
Mouse     2 TGRVCRGCGGTDIELDAARGDAVCTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKT 66

  Fly    67 TNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALGRHLTRGRKSTH 131
            ...| |.|.|..|.|||..|::..::.|..|..||||:||..|||.||||||:.:|||||||..|
Mouse    67 PTLG-GGFHVNLGKESRAQTLQNGRRHIHHLGSQLQLNQHCLDTAFNFFKMAVSKHLTRGRKMAH 130

  Fly   132 IYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSLDPCLYIMRFANRLQ 196
            :.|||:|:.||||||.|:|:|:||:.|:..|.||:|:|.|:..||||.|::||||||.|||:.|:
Mouse   131 VIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLE 195

  Fly   197 LGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTL 261
            .|.|.|||||||||::||||:|.||:||||:||||||||:|||||||.||:.:||.|||:.||||
Mouse   196 FGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTL 260

  Fly   262 RKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFKAARKKDR---------ERIKDMGEHELTEL 317
            ||||:||.:||:..||::|||.:|||.|.||||:.|.::|.|         :::::: |.|::..
Mouse   261 RKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEV-EGEISSY 324

  Fly   318 QKEIDAHLEKDLGKYSNSVYRQLTKGKGLSPLSSPSTPNSSSEKDIELEESRQFIEQSNAEVIKE 382
            |..|:..||....|...::......|.|....|||     ..|:|.|.||........|.:..:|
Mouse   325 QDAIEIELENSRPKAKGALANLSKDGSGEDATSSP-----RCEEDTEDEELEAAASHMNKDFYRE 384

  Fly   383 LIAKNEDVKKSEPGGLVAGIEGLRP----------DIEAICRVTQSDLEDVEK-AKQPQEQ---- 432
            |:..::.   ||..|...|  |.||          ...|...::.|..|.:.. :..|::.    
Mouse   385 LLGDDDG---SEAAGDPDG--GSRPLALESLLGPLPTAASLGISDSIRECISSPSGDPKDSSGDG 444

  Fly   433 ELITDDLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDERLAKERE-----EGKPERKK 492
            ||....::|.|:|:|:|.|.|:..|.|:|...|||||:||||::.|:|||:|     |.|| :|.
Mouse   445 ELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQKEKEARIAKEKELGIYKEHKP-KKS 508

  Fly   493 RKPRKKVIGPSSTAGEAIEKMLQEKKISSKINYEILKTLTDGMGGL--TDDS-PTTSADTKPSTL 554
            .|.|:.::  :|||||||||||::|||||||||.:|:.|....||.  .||| |...|.||    
Mouse   509 CKRREPIL--ASTAGEAIEKMLEQKKISSKINYSVLRDLNSKGGGSPPRDDSQPPERASTK---- 567

  Fly   555 EELKHQPVIVEEGPVASKSRGNRAAYDLPGPS---RKRPKLEVGLPVSKAADVEQ---------A 607
             :|..:           |....|.:.| ||.|   |.||.|. ..|..|||..|.         |
Mouse   568 -KLSRR-----------KRATTRNSAD-PGTSTGKRLRPLLS-AQPAKKAAVGEALLLSSPALGA 618

  Fly   608 E-TKP-AVVVEADDL----DEDADDPDVEPE-AEPEATLQDMLNTGGDDDEFGYGFDEEEE 661
            | .|| ||:||:..:    :||||:.|.|.| .||..:...|:  ||:|    ||.|.:|:
Mouse   619 EPIKPSAVLVESGPVSYHPEEDADEEDAEDEDGEPCVSALQMM--GGND----YGCDGDED 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BrfNP_001163636.1 TF_Zn_Ribbon 5..44 CDD:285471 25/38 (66%)
SUA7 6..270 CDD:224323 162/264 (61%)
CYCLIN 108..164 CDD:294043 34/55 (62%)
CYCLIN 183..268 CDD:238003 62/84 (74%)
BRF1 441..531 CDD:285040 51/94 (54%)
Brf1NP_082469.2 SUA7 4..266 CDD:224323 160/262 (61%)
Repetitive region 91..172 47/80 (59%)
Repetitive region 185..269 61/83 (73%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 342..371 10/33 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 386..408 7/26 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 425..449 5/23 (22%)
BRF1 449..546 CDD:369495 51/99 (52%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 543..603 22/77 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 617..653 15/35 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850672
Domainoid 1 1.000 110 1.000 Domainoid score I6319
eggNOG 1 0.900 - - E1_COG1405
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1161
Inparanoid 1 1.050 487 1.000 Inparanoid score I1411
Isobase 1 0.950 - 0 Normalized mean entropy S1818
OMA 1 1.010 - - QHG53031
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002717
OrthoInspector 1 1.000 - - oto95052
orthoMCL 1 0.900 - - OOG6_101494
Panther 1 1.100 - - LDO PTHR11618
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1499
SonicParanoid 1 1.000 - - X2091
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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