DRSC/TRiP Functional Genomics Resources

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Protein Alignment Brf and brf1a

DIOPT Version :9

Sequence 1:NP_001163636.1 Gene:Brf / 42087 FlyBaseID:FBgn0038499 Length:662 Species:Drosophila melanogaster
Sequence 2:NP_956192.1 Gene:brf1a / 334402 ZFINID:ZDB-GENE-030131-6334 Length:661 Species:Danio rerio


Alignment Length:700 Identity:301/700 - (43%)
Similarity:422/700 - (60%) Gaps:84/700 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQF-EEVGHGAAAIGQFVSAESSGGATNY 69
            :|:.||..:|:.|.|||..|||.|||||||::|||||.| |..|.|::|:||||:.::||...:.
Zfish     3 RCKTCGGTDIDVDQARGVAVCMGCGSVLEDNIIVSEVTFVESGGGGSSAVGQFVAGDASGNVPSL 67

  Fly    70 GYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALGRHLTRGRKSTHIYA 134
            | |.||...|.|||..|::.||:.|..|..|||::||..|||.||:||||.:|||:||||||:.|
Zfish    68 G-GNFQTSVGRESRAATLQNAKRQINHLGHQLQMNQHCLDTAFNFYKMALSKHLTKGRKSTHVIA 131

  Fly   135 ACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSLDPCLYIMRFANRLQLGA 199
            ||:|:.||||||.|:|:|:||:.|:..|.||:|:|.|:..||||.|::||||||.|||..|:.|.
Zfish   132 ACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLVLARELCINAPAIDPCLYIPRFAQLLEFGE 196

  Fly   200 KTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKR 264
            |:|||||||||::||||:|.||:||||:||||||||:|||||:|.||:.:||.|||:.|:|||||
Zfish   197 KSHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHEFRRTIKEVISVVKVCEATLRKR 261

  Fly   265 LSEFAETPSGGLTLEEFMTVDLEREQDPPSFKAARKKDR---------ERIKDMGEHELTELQKE 320
            |.||.:||:..||:||||..|||:|.|||||.|..:|.:         :::.|: |.|:...|.|
Zfish   262 LYEFEDTPTSELTIEEFMKTDLEQECDPPSFAAGLRKQKLKQIEQELAKKVDDI-EGEICGYQDE 325

  Fly   321 IDAHLEKDLGKYSNSVYRQLTKGKGLSPLSSPSTPNSSSEKDIELEESRQFIEQSNAEVIKELIA 385
            |:..||....| :..:|...::...:..|:      |||..|.|.:|.|        .....|..
Zfish   326 IEVELESCRPK-ARGIYASCSREDDVVSLA------SSSHLDGEDDELR--------AAASHLYG 375

  Fly   386 KNEDVKKSEPGGLVAGIEGLRPDI----------------EAICRVTQSDLEDVEKAKQPQEQEL 434
            :||:  :.:.|..|:..:  ||.:                |:|.::.:....|||    .:..||
Zfish   376 ENEE--QEQDGERVSLTK--RPSLSLLLGALPTSASLGLSESITKMGEEKENDVE----AEGGEL 432

  Fly   435 ITDDLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDERLAKEREEGKPERKKRKPRKKV 499
            ....:::||:|:|:|.::|...|.|:|...||:||:||||::||:|||:|||  ..|:|||||..
Zfish   433 DLSGIDEDEIDRYILNDKEVKVKTELWMIQNADYLKEQKEKEERIAKEKEEG--TYKERKPRKST 495

  Fly   500 -----IGPSSTAGEAIEKMLQEKKISSKINYEILKTLTDGMGGLTDDSPT-----TSADTKPS-T 553
                 |. ::||.|||||||::|:||:||||::||.|...    :..|||     .||..|.: .
Zfish   496 RRREPIN-ANTADEAIEKMLEQKRISTKINYDVLKDLNKS----SPKSPTRQPEEASAGAKRTPA 555

  Fly   554 LEELKHQPVIVEEGPVASKSRGNRAAYDLP----GPSRKRPKLEVGLPVSKAADVEQAETKPAVV 614
            ..:.|.|....:.|...| |.|.|..   |    .||:|....::|..|..|.....|:|  |||
Zfish   556 ARQRKPQLTSPDIGKTVS-SFGKRLQ---PLVRAQPSKKLALDQIGSSVPVATPAVSAQT--AVV 614

  Fly   615 VEADDL--DEDADDPDVEPEAEPEATLQDMLNTGGDDDEFGYGFDEEEEY 662
            ||:..:  :|.||:.  |.:.|.|..:..|...||..| :||..|:::.:
Zfish   615 VESGPVAYEEHADEE--EEDEEDEHCVSAMQLMGGTSD-YGYELDDDDGF 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BrfNP_001163636.1 TF_Zn_Ribbon 5..44 CDD:285471 23/37 (62%)
SUA7 6..270 CDD:224323 159/264 (60%)
CYCLIN 108..164 CDD:294043 35/55 (64%)
CYCLIN 183..268 CDD:238003 60/84 (71%)
BRF1 441..531 CDD:285040 50/94 (53%)
brf1aNP_956192.1 SUA7 1..277 CDD:224323 163/274 (59%)
TF_Zn_Ribbon 3..41 CDD:285471 23/37 (62%)
CYCLIN 83..156 CDD:238003 43/72 (60%)
CYCLIN 185..258 CDD:294043 49/72 (68%)
BRF1 439..531 CDD:285040 50/94 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596669
Domainoid 1 1.000 110 1.000 Domainoid score I6250
eggNOG 1 0.900 - - E1_COG1405
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 480 1.000 Inparanoid score I1427
OMA 1 1.010 - - QHG53031
OrthoDB 1 1.010 - - D364940at33208
OrthoFinder 1 1.000 - - FOG0002717
OrthoInspector 1 1.000 - - otm26253
orthoMCL 1 0.900 - - OOG6_101494
Panther 1 1.100 - - LDO PTHR11618
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1499
SonicParanoid 1 1.000 - - X2091
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.800

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