DRSC/TRiP Functional Genomics Resources

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Protein Alignment Brf and brf1

DIOPT Version :9

Sequence 1:NP_001163636.1 Gene:Brf / 42087 FlyBaseID:FBgn0038499 Length:662 Species:Drosophila melanogaster
Sequence 2:NP_001342959.1 Gene:brf1 / 2540071 PomBaseID:SPBC13E7.10c Length:492 Species:Schizosaccharomyces pombe


Alignment Length:533 Identity:185/533 - (34%)
Similarity:301/533 - (56%) Gaps:53/533 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFVSAESSGGATNYG 70
            |.||||...|.|.|.|:..|..||.|:|...|||||.|.|...|||.: |..||.:.:...| :|
pombe     3 CPNCGSTTFESDTASGNTYCTQCGVVVEQDAIVSEVTFGEASTGAAVVQGSLVSNDQTHART-FG 66

  Fly    71 YGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALGRHLTRGRKSTHIYAA 135
             |.::.....||||:||...::.|:.|...|:|::.:.:.|:.:|.:|:..:..:||:|.::.|:
pombe    67 -GPYRNQGSVESRELTIANGRRRISALAIALKLNERHIEAAVRYFTLAINNNFIKGRRSQYVVAS 130

  Fly   136 CVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSLDPCLYIMRFANRLQLGAK 200
            |:|:.||...|||:|||.||:.||..::||.|:|||...|..|:|.|||.|||.|||:.|:.|.:
pombe   131 CLYIVCRISKTSHMLIDFSDILQINVFKLGSTFLKLCRVLRPNLPLLDPSLYISRFASLLEFGPE 195

  Fly   201 THEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRL 265
            ||.|:..|:|:|.||.:|.|..||||.|:|||.|||||||::|.|::.:|:.|||:.:.|::|||
pombe   196 THRVANDAIRLVARMNRDWMQIGRRPAGICGACLLIAARMNNFRRSVREVVHVVKVADITIQKRL 260

  Fly   266 SEFAETPSGGLTLEEFMTVDLEREQDPPSFKAARKKDRERIKDMGEHELTELQKEIDAHLEKDLG 330
            .||..|.||.|::.:|..:.||.:.|||||     ...::.:..|..                  
pombe   261 DEFKLTESGDLSIADFRNIWLEGQSDPPSF-----TKNQKFQQYGAQ------------------ 302

  Fly   331 KYSNSVYRQLTKGKGLSPLSSPSTPNSSSEKDIELEESRQFIEQSNAEVIKELIAKNEDVKKSEP 395
            |.||..:.|    :.:||:.  .||:... .:::.||..|.::..:.|....|.|...:::| |.
pombe   303 KVSNIDHTQ----EYMSPIK--RTPDFDG-NEVKSEELSQTVKVESQETPVHLKADEREIRK-EV 359

  Fly   396 GGLVAGIEGLRPDIEAICRVTQSDLEDVEKAKQPQEQELITDDLNDDELDQYVLTEEESVAKLEM 460
            ...:.|.|..:..::...:.:              |:|:..:|::|||::..:|.::|.:.|.::
pombe   360 TETLKGDELRKISLQVNVKFS--------------EEEVTLEDVDDDEIEDILLDKDEILTKTQV 410

  Fly   461 WKNLNAEYLQEQKERDERLAKEREEG---KPERKKR-KPRKKVI-GPSSTAGEAIEKMLQEKKIS 520
            |..||.:||.|::.::.:|.::.::|   :|.:::| :||.... |.:.||.|:.::|:|::..|
pombe   411 WMELNKDYLAEEEAKNLKLQEDLKKGIVRQPRKRRRYRPRDSTSDGIADTAAESAKEMMQQRAFS 475

  Fly   521 SKINYEILKTLTD 533
            .|||||.|..|.|
pombe   476 KKINYEALDMLFD 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BrfNP_001163636.1 TF_Zn_Ribbon 5..44 CDD:285471 19/36 (53%)
SUA7 6..270 CDD:224323 118/263 (45%)
CYCLIN 108..164 CDD:294043 21/55 (38%)
CYCLIN 183..268 CDD:238003 45/84 (54%)
BRF1 441..531 CDD:285040 31/94 (33%)
brf1NP_001342959.1 SUA7 1..275 CDD:224323 122/273 (45%)
BRF1 398..488 CDD:311606 29/89 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 81 1.000 Domainoid score I2317
eggNOG 1 0.900 - - E1_COG1405
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1161
Inparanoid 1 1.050 306 1.000 Inparanoid score I588
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002717
OrthoInspector 1 1.000 - - oto102002
orthoMCL 1 0.900 - - OOG6_101494
Panther 1 1.100 - - LDO PTHR11618
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1499
SonicParanoid 1 1.000 - - X2091
TreeFam 1 0.960 - -
1312.850

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