DRSC/TRiP Functional Genomics Resources

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Protein Alignment m-cup and AT4G03500

DIOPT Version :9

Sequence 1:NP_650607.1 Gene:m-cup / 42076 FlyBaseID:FBgn0038488 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_192259.1 Gene:AT4G03500 / 827731 AraportID:AT4G03500 Length:652 Species:Arabidopsis thaliana


Alignment Length:253 Identity:56/253 - (22%)
Similarity:92/253 - (36%) Gaps:61/253 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 SMANERKQSSPKVELTKLSHDLIEECKRSQEDSLLSR-----HLRHE----------------LE 85
            :|.:...:.|.||....:.|..::..::...|:|||:     :||.|                ..
plant   233 TMCHGTNELSSKVGGRSIVHAALKANRKDILDALLSKDASLINLRDEGRTSLSFGASIGYYQGFS 297

  Fly    86 KLPRDSRRELVRKQRNGCAPLFIACKRGAVDIAEYLITICEANIEQRGHFEVPEDNSFHYVSPLW 150
            .|...:|.::.....:|..|..:|.|.|.|.|.|.::..|...||.   .:....|..|      
plant   298 YLFDKNRDKVYVSDDDGLFPTHMAAKYGHVQILEEILKHCPEAIEL---LDRDGQNILH------ 353

  Fly   151 AAVVSGKLSMVKYLVRIGCD------INATSDSGSTPVRSACYMTHVDIVK-FLVENGADIKRPN 208
            .|...|||.::|:::....|      ||....:|:||:..|....|..:|. |..::..|:|:.|
plant   354 LAAKYGKLKVIKFILSCCKDKNKKKLINEQDVNGNTPLHLATINWHPKVVSMFTWDHRVDLKKRN 418

  Fly   209 INGGTCLINSVQSVQLCLYLVRKGADINARDIQDKTALHYAIQEHRLDTTKLLIEQGA 266
            ..|.|.|                  |:...:|.....:|..:      |...||..||
plant   419 YIGFTAL------------------DVAEENIDSSYIVHQRL------TWMALINAGA 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
m-cupNP_650607.1 ANK repeat 101..175 CDD:293786 21/79 (27%)
Ank_2 <101..174 CDD:289560 21/78 (27%)
ANK 147..262 CDD:238125 25/121 (21%)
Ank_2 149..239 CDD:289560 22/96 (23%)
ANK repeat 177..208 CDD:293786 9/31 (29%)
ANK repeat 210..239 CDD:293786 4/28 (14%)
ANK repeat 241..271 CDD:293786 6/26 (23%)
Ank_4 244..294 CDD:290365 6/23 (26%)
ANK 591..>657 CDD:238125
Ank_2 591..>641 CDD:289560
ANK repeat 611..641 CDD:293786
AT4G03500NP_192259.1 Ank_2 73..166 CDD:289560
ANK 98..231 CDD:238125
ANK repeat 101..132 CDD:293786
ANK repeat 135..178 CDD:293786
Ank_2 185..278 CDD:289560 10/44 (23%)
ANK 212..368 CDD:238125 32/143 (22%)
ANK repeat 214..244 CDD:293786 2/10 (20%)
ANK repeat 246..278 CDD:293786 6/31 (19%)
ANK 311..437 CDD:238125 36/152 (24%)
ANK repeat 313..345 CDD:293786 11/34 (32%)
Ank_2 319..418 CDD:289560 28/107 (26%)
ANK repeat 347..384 CDD:293786 10/42 (24%)
ANK repeat 386..418 CDD:293786 9/31 (29%)
PGG 473..581 CDD:290670
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 77 1.000 Inparanoid score I2399
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X100
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.050

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