DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment m-cup and Fem1b

DIOPT Version :9

Sequence 1:NP_650607.1 Gene:m-cup / 42076 FlyBaseID:FBgn0038488 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_001101627.1 Gene:Fem1b / 315745 RGDID:1304569 Length:627 Species:Rattus norvegicus


Alignment Length:637 Identity:171/637 - (26%)
Similarity:282/637 - (44%) Gaps:85/637 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 QRNG--CAPLFIACKRGAVDIAEYLITICEANIEQRG--HFEVPEDNSFHYV----SPLWAAVVS 155
            |:.|  ..||.||.:.|...:...|:.......:|.|  .|:       .||    :.||.|..:
  Rat    41 QQGGQRSTPLIIAARNGHAKVVRLLLEHYRVQTQQTGTVRFD-------GYVIDGATALWCAAGA 98

  Fly   156 GKLSMVKYLVRIGCDINATSDSGSTPVRSACYMTHVDIVKFLVENGADIKRPNINGGTCLINSVQ 220
            |...:||.||..|.::|.|:.:.|||:|:||:...:||||:||||.|:|...|....|||:.:..
  Rat    99 GHFEVVKLLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYLVENNANISIANKYDNTCLMIAAY 163

  Fly   221 S--VQLCLYLVRKGADINARDIQDKTALHYAIQEHRLDTTKLLIEQGADPYARSRYGDDALRTAC 283
            .  ..:..||:.:.||.||:.....||||:|.:...:|..|.||:..| ....:.:|...|:.|.
  Rat   164 KGHTDVVRYLLEQRADPNAKAHCGATALHFAAEAGHIDIVKELIKWRA-AIVVNGHGMTPLKVAA 227

  Fly   284 LKGAHHIFDFLKKQLHYTPARLAEAHELMGSTFLDEHNESRVCILHWRMAHHIRAAY-------S 341
            ......:.:.|............||.||:|::|.::.....:    .:..|::..|.       .
  Rat   228 ESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDI----MKTYHYLYLAMLERFQDGD 288

  Fly   342 PYIEKKPQVPLRTAYENAVEFSTLEELDNIATDMDAMRTQSLLICERVLGLTHKDMLFRLTFRGA 406
            ..:||:...|:. ||.|..|....:||:.|..|.||:..:.|::.||:||..:.|:...:.:|||
  Rat   289 NILEKEVLPPIH-AYGNRTECRNPQELEAIRQDRDALHMEGLIVRERILGADNIDVSHPIIYRGA 352

  Fly   407 SYADSLQLQRCIDLWRFLLEVRVSNWSILHFETCFAAQALVRLMLDLHVQNSSHIRSDARA---R 468
            .|||:::.::||.||...|.:|.......|.:....||...:::         |:....:|   .
  Rat   353 VYADNMEFEQCIKLWLHALHLRQKGNRNTHKDLLRFAQVFSQMI---------HLNEAVKAPDIE 408

  Fly   469 FVHQDKVLPRFEDVLGVFRTLSESAIVVKHLLLLRPVFRRQQENYDRVMRCLAHLIYLLINTVHT 533
            .|.:..|| ..|..:...:.:|::.:            ....:||:..:....:|:.:...|..:
  Rat   409 CVLRCSVL-EIEQSMNRVKNISDADV------------HSAMDNYECNLYTFLYLVCISTKTQCS 460

  Fly   534 EAQ----NKLICQAVHEAVVVGNLRSASTAD--TMLHLCASRLNVIKSGYITDD-NFADKTVFPN 591
            |..    ||.|...:|        ....|.:  |:|||      .:.|....|| :..|...|||
  Rat   461 EEDQCRINKQIYNLIH--------LDPRTREGFTLLHL------AVNSNTPVDDFHTNDVCSFPN 511

  Fly   592 ADVIKLLIQCGVDVNTKNEAKSTPLHVACQPYNYD-------NEIVHLLLKCGGDIDQPNRADKR 649
            |.|.|||:.||.:||..:...::.||:..| ||..       :.|:..|::.|...|..|:.:|.
  Rat   512 ALVTKLLLDCGAEVNAVDNEGNSALHIIVQ-YNRPISDFLTLHSIIISLVEAGAHTDMTNKQNKT 575

  Fly   650 PYDLIASNPTSTIPLLNF-VTLQCLAATAISKHRIPYHNQLHRQLEKFVRNH 700
            |.|...:..:..:..... ::|:||||.|:..:.|.|.:|:.|.||:||..|
  Rat   576 PLDKSTTGVSEILLKTQMKMSLKCLAARAVRANDINYQDQIPRTLEEFVGFH 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
m-cupNP_650607.1 ANK repeat 101..175 CDD:293786 22/81 (27%)
Ank_2 <101..174 CDD:289560 22/80 (28%)
ANK 147..262 CDD:238125 44/116 (38%)
Ank_2 149..239 CDD:289560 37/91 (41%)
ANK repeat 177..208 CDD:293786 16/30 (53%)
ANK repeat 210..239 CDD:293786 9/30 (30%)
ANK repeat 241..271 CDD:293786 10/29 (34%)
Ank_4 244..294 CDD:290365 13/49 (27%)
ANK 591..>657 CDD:238125 23/72 (32%)
Ank_2 591..>641 CDD:289560 18/56 (32%)
ANK repeat 611..641 CDD:293786 8/36 (22%)
Fem1bNP_001101627.1 Ank_2 11..117 CDD:403870 23/82 (28%)
ANK 1 45..74 6/28 (21%)
ANK repeat 48..85 CDD:293786 9/43 (21%)
ANK repeat 87..118 CDD:293786 10/30 (33%)
ANK 2 87..116 9/28 (32%)
Ank_2 92..183 CDD:403870 36/90 (40%)
ANK repeat 120..151 CDD:293786 16/30 (53%)
ANK 3 120..149 16/28 (57%)
ANK repeat 153..183 CDD:293786 8/29 (28%)
ANK 4 153..182 7/28 (25%)
Ank_2 158..247 CDD:403870 21/89 (24%)
ANK 5 186..215 10/29 (34%)
ANK repeat 186..211 CDD:293786 9/24 (38%)
ANK 6 218..248 4/29 (14%)
ANK repeat 218..247 CDD:293786 4/28 (14%)
TPR 344..377 12/32 (38%)
PHA03095 475..>613 CDD:222980 42/152 (28%)
ANK repeat 483..529 CDD:293786 20/51 (39%)
ANK 7 483..527 19/49 (39%)
ANK repeat 531..570 CDD:293786 9/39 (23%)
ANK 8 531..568 8/37 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0508
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D133963at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.