DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5255 and scaf

DIOPT Version :10

Sequence 1:NP_650604.1 Gene:CG5255 / 42073 FlyBaseID:FBgn0038485 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster


Alignment Length:191 Identity:41/191 - (21%)
Similarity:73/191 - (38%) Gaps:31/191 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 KNRIVGGEEAAAGLA--PYQISLQGIGSGAHSCGGAIIDERWIITAAHCTRGRQATAFRVLTGTQ 89
            :.:..|.::..|..|  |:|..:....|....||||||.:::::::|.|..|...|..||..|..
  Fly   418 RTKPTGVKDLDANFAEIPWQAMILRESSKTLICGGAIIGDQFVLSSASCVNGLPVTDIRVKAGEW 482

  Fly    90 DLHQNGSKYYYP----DRIVEHSNYAPRKYRNDIALLHLNESIVFDNATQPVELDHEALVPGSRL 150
            :|........:.    ..:..|.:|.|....:|:|::.|...:.|.:..||:.:..|......:.
  Fly   483 ELGSTNEPLPFQLTGVKTVDVHPDYDPSTNSHDLAIIRLERRLEFASHIQPICISDEDPKDSEQC 547

  Fly   151 LLTGWGTLSLGGDVPARLQSLEVNYVPFEQCRAAHDNSTRVDIGHVCTFNDKGRGACHGDS 211
            ..:|||                      :|..:.|:...   :.||.....:.|..|..||
  Fly   548 FTSGWG----------------------KQALSIHEEGA---LMHVTDTLPQARSECSADS 583

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5255NP_650604.1 Tryp_SPc 29..249 CDD:214473 41/189 (22%)
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 40/181 (22%)
Blue background indicates that the domain is not in the aligned region.

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