DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5255 and psh

DIOPT Version :10

Sequence 1:NP_650604.1 Gene:CG5255 / 42073 FlyBaseID:FBgn0038485 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_573297.1 Gene:psh / 32832 FlyBaseID:FBgn0030926 Length:394 Species:Drosophila melanogaster


Alignment Length:251 Identity:78/251 - (31%)
Similarity:115/251 - (45%) Gaps:41/251 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 IVGGEEAAAGLAPYQISLQGIGSGA-HSCGGAIIDERWIITAAHCTRGRQATAFRVLTGTQDLHQ 93
            ||||.....|:.|:..::..|..|. ..|||::|..|:::|||||......|...|..|..::  
  Fly   144 IVGGYPVDPGVYPHMAAIGYITFGTDFRCGGSLIASRFVLTAAHCVNTDANTPAFVRLGAVNI-- 206

  Fly    94 NGSKYYYPDRIVE----HSNYAPRKYRNDIALLHLNESIVFDNATQPVELDHEALVP--GSRLLL 152
            ....:.|.|.::.    |..|...|| ||||:|.|...:|..:..:|..|..:|..|  .|:..:
  Fly   207 ENPDHSYQDIVIRSVKIHPQYVGNKY-NDIAILELERDVVETDNIRPACLHTDATDPPSNSKFFV 270

  Fly   153 TGWGTLSLGGDVPARLQS-------LEVNYVPFEQCR---AAHDNSTR------VDIGHVCTFND 201
            .|||.|    :|..|.:|       ||:  ||.:||.   |....|.|      :| ..:|..:.
  Fly   271 AGWGVL----NVTTRARSKILLRAGLEL--VPLDQCNISYAEQPGSIRLLKQGVID-SLLCAIDQ 328

  Fly   202 K-GRGACHGDSGGPLVH-----NG--KLVALVNWGLPCAKGYPDAHASISYYHDFI 249
            | ...||.|||||||:|     :|  .::.:::.|..||...|..:..:|.|.|||
  Fly   329 KLIADACKGDSGGPLIHELNVEDGMYTIMGVISSGFGCATVTPGLYTRVSSYLDFI 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5255NP_650604.1 Tryp_SPc 29..249 CDD:214473 76/249 (31%)
pshNP_573297.1 CLIP 30..79 CDD:197829
Tryp_SPc 144..387 CDD:238113 78/251 (31%)
Blue background indicates that the domain is not in the aligned region.

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