DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5246 and LOC560023

DIOPT Version :9

Sequence 1:NP_650603.1 Gene:CG5246 / 42072 FlyBaseID:FBgn0038484 Length:272 Species:Drosophila melanogaster
Sequence 2:XP_021325702.1 Gene:LOC560023 / 560023 -ID:- Length:271 Species:Danio rerio


Alignment Length:239 Identity:77/239 - (32%)
Similarity:126/239 - (52%) Gaps:26/239 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 RVIGGVDSPTGFAPYQVSIMNTFGEHVCGGSIIAPQWILTAAHCMEW-PIQYLKIVTGTVDY-TR 103
            |:|||.:.......|||| :....:|.|||::|.|||:||||||  | |...:::|....:. ..
Zfish    43 RIIGGQEVVPYSIKYQVS-LQVDRKHFCGGTLIQPQWVLTAAHC--WRPASVIQVVLSEHNLAVE 104

  Fly   104 PGAEYLVDGSKI--HCSHDKPAYHNDIALIHTAKPIVYDDLTQPIKLASKGSLPKV--GDKLTLT 164
            .|.|.:...:|:  |.:::...::|||.:|....|...:...||..|.: ...|::  |...|::
Zfish   105 EGFEQVCTVAKVFSHVAYNPKTFNNDIMIIKLTAPAQINAYVQPALLPT-ADTPELAGGSSCTVS 168

  Fly   165 GWGSTKTWGRY-STQLQKIDLNYIDHDNCQ----SRVRNANWLSEGHVCTFTQ-EGEGSCHGDSG 223
            |||.|:.:..| |..|:.:|:...  .:||    .||      ::..:|..:: .|:.||.||||
Zfish   169 GWGVTRLYNFYLSPILRAVDVEIF--SSCQLYYYYRV------NDNMICAGSRFGGKDSCQGDSG 225

  Fly   224 GPLVDANQTLVGVVNWGEACAIG-YPDVFGSVAYYHDWIEQMMT 266
            |||: .:..|.|:|:||..||:. ||.|:..|..|:.||:.:::
Zfish   226 GPLI-CDGYLEGIVSWGIGCALPYYPGVYTKVRNYNRWIDWIIS 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5246NP_650603.1 Tryp_SPc 41..261 CDD:214473 75/232 (32%)
Tryp_SPc 42..263 CDD:238113 76/233 (33%)
LOC560023XP_021325702.1 Tryp_SPc 43..263 CDD:214473 75/232 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D469244at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.