DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5246 and F11

DIOPT Version :10

Sequence 1:NP_650603.1 Gene:CG5246 / 42072 FlyBaseID:FBgn0038484 Length:272 Species:Drosophila melanogaster
Sequence 2:NP_001398595.1 Gene:F11 / 290757 RGDID:1309364 Length:622 Species:Rattus norvegicus


Alignment Length:239 Identity:87/239 - (36%)
Similarity:127/239 - (53%) Gaps:20/239 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 VKPETRVIGGVDSPTGFAPYQVSIMNTFGEHVCGGSIIAPQWILTAAHCM---EWPIQYLKIVTG 97
            ::|  ||.||..|..|..|:||::..|.| |:||||||..:||||||||.   |.| :.|::..|
  Rat   384 IRP--RVFGGAASVHGEWPWQVTLHTTQG-HLCGGSIIGNRWILTAAHCFSGTETP-KTLRVYGG 444

  Fly    98 TVDYTRPGAE---YLVDGSKIHCSHDKPAYHNDIALIHTAKPIVYDDLTQPIKLASKGSLPKVGD 159
            .|:.:....:   :.|....||..:.......||||:.....:.|.|..:||.|.|||....|..
  Rat   445 IVNQSEINEDTTFFRVQEMIIHDQYTSAESGFDIALLKLEPAMNYTDFQRPICLPSKGDRNVVHT 509

  Fly   160 KLTLTGWGSTKTWGRYSTQLQKIDLNYIDHDNCQSRVRNANWLSEGHVCT-FTQEGEGSCHGDSG 223
            :..:||||.||:.....:.|||..:..:.::.||:|.|. :.::...:|. :.:.|:.:|.||||
  Rat   510 ECWVTGWGYTKSRDEVQSTLQKAKVPLVSNEECQTRYRK-HKITNKVICAGYKEGGKDTCKGDSG 573

  Fly   224 GPLVDANQ---TLVGVVNWGEACAIGY---PDVFGSVAYYHDWI 261
            |||...:.   .|||:.:|||.|  |.   |.|:.:||.|.|||
  Rat   574 GPLSCKHNGVWHLVGITSWGEGC--GQKERPGVYTNVAKYVDWI 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5246NP_650603.1 Tryp_SPc 42..263 CDD:238113 85/233 (36%)
F11NP_001398595.1 APPLE 20..103 CDD:128519
APPLE 110..193 CDD:128519
APPLE 200..283 CDD:128519
APPLE 291..374 CDD:128519
Tryp_SPc 388..615 CDD:238113 83/231 (36%)
Blue background indicates that the domain is not in the aligned region.

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