DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5246 and Tmprss2

DIOPT Version :10

Sequence 1:NP_650603.1 Gene:CG5246 / 42072 FlyBaseID:FBgn0038484 Length:272 Species:Drosophila melanogaster
Sequence 2:XP_008766769.1 Gene:Tmprss2 / 156435 RGDID:620766 Length:580 Species:Rattus norvegicus


Alignment Length:268 Identity:89/268 - (33%)
Similarity:140/268 - (52%) Gaps:23/268 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SVLVILSQCSAKSVKIHRRHQLNHHLGHVKPETRVIGGVDSPTGFAPYQVSIMNTFGEHVCGGSI 72
            |.:|:..:|....|:..||            ::|::||..:..|..|:||| ::..|.|||||||
  Rat   232 SRMVVSLRCIECGVRSVRR------------QSRIVGGSTASPGDWPWQVS-LHVQGIHVCGGSI 283

  Fly    73 IAPQWILTAAHCMEWPI---QYLKIVTGTVDYTRP--GAEYLVDGSKIHCSHDKPAYHNDIALIH 132
            |.|:||:|||||:|.|:   :|.....|.:..:..  |:.:.|:....|.::|....:|||||:.
  Rat   284 ITPEWIVTAAHCVEEPLSSPRYWTAFAGILKQSLMFYGSRHQVEKVISHPNYDSKTKNNDIALMK 348

  Fly   133 TAKPIVYDDLTQPIKLASKGSLPKVGDKLTLTGWGSTKTWGRYSTQLQKIDLNYIDHDNCQSRVR 197
            ...|:.::|:.:|:.|.:.|.:..:..:..::|||:|...|:.|..|....:..|:...|.|:..
  Rat   349 LQTPLAFNDVVKPVCLPNPGMMLDLAQECWISGWGATYEKGKTSDVLNAAMVPLIEPSKCNSKYI 413

  Fly   198 NANWLSEGHVCT-FTQEGEGSCHGDSGGPLVDANQT---LVGVVNWGEACAIGY-PDVFGSVAYY 257
            ..|.::...:|. |.|....||.||||||||.....   |:|..:||..||..| |.|:|:|..:
  Rat   414 YNNLITPAMICAGFLQGSVDSCQGDSGGPLVTLKNEIWWLIGDTSWGSGCAKAYRPGVYGNVTVF 478

  Fly   258 HDWIEQMM 265
            .|||.|.|
  Rat   479 TDWIYQQM 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5246NP_650603.1 Tryp_SPc 42..263 CDD:238113 80/230 (35%)
Tmprss2XP_008766769.1 LDLa 112..147 CDD:238060
SRCR_2 152..247 CDD:464747 4/14 (29%)
Tryp_SPc 254..485 CDD:238113 80/231 (35%)
Blue background indicates that the domain is not in the aligned region.

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