DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4053 and Ovch2

DIOPT Version :10

Sequence 1:NP_650601.2 Gene:CG4053 / 42070 FlyBaseID:FBgn0038482 Length:265 Species:Drosophila melanogaster
Sequence 2:XP_003749007.2 Gene:Ovch2 / 308919 RGDID:1564636 Length:579 Species:Rattus norvegicus


Alignment Length:286 Identity:89/286 - (31%)
Similarity:128/286 - (44%) Gaps:55/286 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 GKRL-----DNRKLLDNRIVGGQEAEDGVAPYQVSIQTIWKTHICSGVILNEQWILTAGHCALDF 81
            ||.|     .|...|.:|||||.:.|.|..|:|||::...| |||.|.|::.||::||.||..:.
  Rat    34 GKSLVKPWPQNYFSLFSRIVGGSQVEKGSYPWQVSLKQKQK-HICGGTIISSQWVITAAHCMANR 97

  Fly    82 SIE-DLRIIVGTND--RLEPG-QTLFPDEALVHCLYDIPYVYNNDIALIHVNESIIFNDRTQIVE 142
            :|. .|.:..|.:|  :.||| |||..:..::|..:......|.||||:.:..:..|....:.|.
  Rat    98 NIALTLNVTAGEHDLSQAEPGEQTLAIETIIIHPQFSTKKPMNYDIALLKMVGTFQFGQFVRPVC 162

  Fly   143 LSR--EQPPAGSTVTLTGWGAPESSYPTVQYLQTLNLTIIAHEECRERWDFHDGIDI-------- 197
            |..  ||..||...|..|||.........|.||.:||.|:.||||       :.:.:        
  Rat   163 LPEPGEQFNAGYICTTAGWGRLSEGGSLPQVLQQVNLPILTHEEC-------EAVMLTLRNPITG 220

  Fly   198 -GHICTFTRE-GEGACSGDSGGPLMWEGK-----LVGLVNWGRACG-----------VGMPDMYA 244
             ..:||.:.: |..||.|||||.||.:.:     |.|:.:||..||           .|.|.::.
  Rat   221 KTFLCTGSPDGGRDACQGDSGGSLMCQNRKGAWTLAGVTSWGLGCGRSWRNNARKKEQGSPGIFT 285

  Fly   245 NTVYYQDWI----------RRTHSGC 260
            :......||          :.|.:.|
  Rat   286 DLRRVLPWIHEHVQTGHRRKSTKASC 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4053NP_650601.2 Tryp_SPc 35..256 CDD:238113 81/262 (31%)
Ovch2XP_003749007.2 Tryp_SPc 52..297 CDD:238113 81/252 (32%)
CUB 317..420 CDD:238001
CUB 431..541 CDD:238001
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.