DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4053 and F11

DIOPT Version :10

Sequence 1:NP_650601.2 Gene:CG4053 / 42070 FlyBaseID:FBgn0038482 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_001398595.1 Gene:F11 / 290757 RGDID:1309364 Length:622 Species:Rattus norvegicus


Alignment Length:258 Identity:82/258 - (31%)
Similarity:123/258 - (47%) Gaps:42/258 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 LDN--------RIVGGQEAEDGVAPYQVSIQTIWKTHICSGVILNEQWILTAGHCALDFS----I 83
            :||        |:.||..:..|..|:||::.|. :.|:|.|.|:..:|||||.||   ||    .
  Rat   376 MDNVCTTKIRPRVFGGAASVHGEWPWQVTLHTT-QGHLCGGSIIGNRWILTAAHC---FSGTETP 436

  Fly    84 EDLRIIVGTNDRLEPGQ--TLF-PDEALVHCLYDIPYVYNNDIALIHVNESIIFNDRTQIVELSR 145
            :.||:..|..::.|..:  |.| ..|.::|..| .......||||:.:..::.:.|..:.:.|  
  Rat   437 KTLRVYGGIVNQSEINEDTTFFRVQEMIIHDQY-TSAESGFDIALLKLEPAMNYTDFQRPICL-- 498

  Fly   146 EQPPAG------STVTLTGWGAPESSYPTVQYLQTLNLTIIAHEECRERWDFHDGIDIGHICTFT 204
              |..|      :...:||||..:|.......||...:.::::|||:.|:..|. |....||...
  Rat   499 --PSKGDRNVVHTECWVTGWGYTKSRDEVQSTLQKAKVPLVSNEECQTRYRKHK-ITNKVICAGY 560

  Fly   205 RE-GEGACSGDSGGPL------MWEGKLVGLVNWGRACG-VGMPDMYANTVYYQDWI-RRTHS 258
            :| |:..|.|||||||      :|.  |||:.:||..|| ...|.:|.|...|.||| .:|.|
  Rat   561 KEGGKDTCKGDSGGPLSCKHNGVWH--LVGITSWGEGCGQKERPGVYTNVAKYVDWILEKTQS 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4053NP_650601.2 Tryp_SPc 35..256 CDD:238113 77/242 (32%)
F11NP_001398595.1 APPLE 20..103 CDD:128519
APPLE 110..193 CDD:128519
APPLE 200..283 CDD:128519
APPLE 291..374 CDD:128519
Tryp_SPc 388..615 CDD:238113 75/238 (32%)
Blue background indicates that the domain is not in the aligned region.

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