DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4053 and svh-1

DIOPT Version :10

Sequence 1:NP_650601.2 Gene:CG4053 / 42070 FlyBaseID:FBgn0038482 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_501379.2 Gene:svh-1 / 182375 WormBaseID:WBGene00006620 Length:951 Species:Caenorhabditis elegans


Alignment Length:243 Identity:64/243 - (26%)
Similarity:109/243 - (44%) Gaps:23/243 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 RIVGGQEAEDGVAPYQVSIQT-IWKTHICSGVILNEQWILTAGHC-ALDFSIEDLRIIVG--TND 94
            |:|||.|...|..|:..:::. ..|.|.|...||::..::||.|| ..|..:....::||  .|:
 Worm   712 RVVGGFETVPGAFPWTAALRNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNN 776

  Fly    95 RLEPGQTLFPDEAL-VHCLY-DIPYVYNNDIALIHV-NESIIFNDRTQIVELSREQ---PPAGST 153
            :.:..:.:|..:.: .:.|| ||   :::|||::.: ...|.||:..|.:.|..:.   .| |..
 Worm   777 QTDGNEQIFYLQRIHFYPLYKDI---FSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTP-GRQ 837

  Fly   154 VTLTGWGAPESSYPTVQYLQTLNLTIIAHEECRERWDFHDGIDIGHICT-FTREGEGACSGDSGG 217
            ..::|||:....|  .:.||...:.||...:|......:..:.....|. :...|..:|.|||||
 Worm   838 CVVSGWGSMGLRY--AERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGYLEGGIDSCQGDSGG 900

  Fly   218 PLMWEGK-----LVGLVNWGRACG-VGMPDMYANTVYYQDWIRRTHSG 259
            |.....:     |.|:::||..|. ...|.:|.....|..||....:|
 Worm   901 PFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWISAIING 948

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4053NP_650601.2 Tryp_SPc 35..256 CDD:238113 62/237 (26%)
svh-1NP_501379.2 KR 227..306 CDD:214527
LDLa 320..355 CDD:238060
PAN_AP_HGF 373..434 CDD:238532
LDLa 558..590 CDD:197566
SR 599..681 CDD:214555
Tryp_SPc 713..945 CDD:238113 62/237 (26%)
Blue background indicates that the domain is not in the aligned region.

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