DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17475 and scaf

DIOPT Version :10

Sequence 1:NP_650600.2 Gene:CG17475 / 42069 FlyBaseID:FBgn0038481 Length:288 Species:Drosophila melanogaster
Sequence 2:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster


Alignment Length:210 Identity:55/210 - (26%)
Similarity:84/210 - (40%) Gaps:32/210 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 ICGGCIIDERHVLTAAHCVYGYNPTYLRVITGTVEYE-------KPDAVYFVEEHWIHCNYNSPD 132
            ||||.||.::.||::|.||.|...|.:||..|  |:|       .|..:..|:...:|.:|:...
  Fly   449 ICGGAIIGDQFVLSSASCVNGLPVTDIRVKAG--EWELGSTNEPLPFQLTGVKTVDVHPDYDPST 511

  Fly   133 YHNDIALIRLNDTIKFNEYTQPAELPTAPVANGTQLLLTGWGSTELWGDTPDILQKAYLTHV--- 194
            ..:|:|:|||...::|..:.||..:......:..|...:|||...|     .|.::..|.||   
  Fly   512 NSHDLAIIRLERRLEFASHIQPICISDEDPKDSEQCFTSGWGKQAL-----SIHEEGALMHVTDT 571

  Fly   195 ---VYSTCQEIMNNDPSNGPCHICTLTTGGQGACHGDSGGPLTHNGVLYG--LVNWGYPCALGVP 254
               ..|.|....::..|......|....|...||  .||..:...|:..|  ....|.......|
  Fly   572 LPQARSECSADSSSVCSATKFDSCQFDVGSALAC--GSGSSVRLKGIFAGENSCGEGQTVRFAKP 634

  Fly   255 DSHANVYYYLEWIRS 269
            |        ::||.:
  Fly   635 D--------IKWINT 641

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17475NP_650600.2 Tryp_SPc 50..269 CDD:238113 55/208 (26%)
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 48/175 (27%)
Blue background indicates that the domain is not in the aligned region.

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