DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cher and pleca

DIOPT Version :10

Sequence 1:NP_001262659.2 Gene:cher / 42066 FlyBaseID:FBgn0014141 Length:2577 Species:Drosophila melanogaster
Sequence 2:XP_021323777.1 Gene:pleca / 567639 ZFINID:ZDB-GENE-030131-8984 Length:4778 Species:Danio rerio


Alignment Length:737 Identity:180/737 - (24%)
Similarity:273/737 - (37%) Gaps:235/737 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 SHGRKNAPNSQQNQQNACVYTTSNSNNNNLEHNFSNLHFYAQQPAAHYDVCHQQ-------TNDY 152
            |.||:.......::::|...:||....:.|..|...               ||:       :.|.
Zfish   162 SGGRRRMLERSASEESASDLSTSPFPGDTLPWNLPK---------------HQRVKRSKSASGDV 211

  Fly   153 YQPA-RQEGQQADQYEENFDEDMEAERDLAEDAQWKKIQQNTFTRWANEHL-----KTIDRSINN 211
            ..|| |...:.||            |||        ::|:.|||:|.|:||     ....|.|.:
Zfish   212 LDPAERAVIRIAD------------ERD--------RVQKKTFTKWVNKHLVKHWKAEAQRHITD 256

  Fly   212 LETDLSDGLRLIALIEVLSQKRMPKYNKRPTFRSQKLENVSVALKFLQDEGIKIVNIDSSDIVDC 276
            |..||.||..||:|:||||.:.:|:...|  .|..||:||.:||.||:...:|:|||.:.||.|.
Zfish   257 LYEDLRDGHNLISLLEVLSGETLPREKGR--MRFHKLQNVQIALDFLKHRQVKLVNIRNDDIADG 319

  Fly   277 KLKLILGLIWTLILHYSISMPMWDGEDDKQLNGSGH--TPKQRLLNWIHAKI---PDLPINNFTN 336
            ..||.||||||:|||:.||        |.|:||...  |.|::||.|....:   ..|..:|||.
Zfish   320 NPKLTLGLIWTIILHFQIS--------DIQVNGQSDDMTAKEKLLLWSQRMVEGYQGLRCDNFTT 376

  Fly   337 DWTTGKAVGALVDACAPGLCPDWELWDPKDAVQNASEAMGLADDWLNVRQLIKPEELVNPNVDEQ 401
            .|..|:...|::....|.|....:::...: ::|..:|..:|:..|.|.:|:.||::..|:.||:
Zfish   377 SWRDGRLFNAIIHKHRPNLIDINKVYRQTN-LENLEQAFSIAERDLGVTRLLDPEDVDVPHPDEK 440

  Fly   402 SMMTYLSQYPNSKLKTGAPLRPKTNPNSIPPPRVRAYGPGIEPIGPVVGAPAN------------ 454
            |::||:|...:..                  |||    |.:..     |..||            
Zfish   441 SIITYVSSMYDVM------------------PRV----PDVRD-----GVKANELELRWQEYYEL 478

  Fly   455 --------------FTVETFSAGKGSVDV---------DIQGPNGEIEKADVRFNNDKNLTYTVS 496
                          |....|.:....::|         :.:.|..|.:|      |...|.|.  
Zfish   479 VTMLLQWIRHHVIVFEERKFPSSYEEIEVLWRQFLKFKETELPAKETDK------NRSKLIYK-- 535

  Fly   497 YIPKSEGSHKVAVKFSGRDIPKSPFPVKVEGHAGD-------------------------ASKVK 536
                   |.:.||:.....:|.:..|:.||...|.                         .|||:
Zfish   536 -------SFEGAVQAGQVKVPPNYHPIDVEKEWGRLHVAILEREKLLRSEFERLERLQRIVSKVQ 593

  Fly   537 VTGPGI---QPNGVTIKKPTFFDILAKDAGRGVPEVIIIDPANHKTSVAA-------KVRQLEND 591
            :.. |:   |.|.|.....|  ||....||:         |..|.:.:..       .:|.|.||
Zfish   594 MES-GVCEEQLNQVETLLQT--DIRLLSAGK---------PIQHASDIETDLNKAENMIRYLFND 646

  Fly   592 TWRCEYVTALQG---------LHS--VNV-------FYAGTPIPNSPFPVKVAPLSDARKVRASG 638
            ....:....||.         ||.  ||:       ..:|..:  |..|:...|::....|:.  
Zfish   647 VQLLKDGRHLQAEQMYRRVYRLHERLVNLRSEFNLRLKSGVTL--SQVPMTQVPMTQISHVQT-- 707

  Fly   639 RGLQATGVRVGDDAD---FKIY-------------TEGA--GEGEPEV--RVIGPGGMNQNV--M 681
              ||.:..||..|.|   .|..             .|||  ||..|.|  ::....|::|::  .
Zfish   708 --LQQSPQRVRPDLDEVTLKYIQDLLSWVEENQRRIEGAEWGEDLPSVESQLGSHRGLHQSIEEF 770

  Fly   682 QSKVD-GNTYECHYYPTKEGRY 702
            :.|:| ....|....|..:|.|
Zfish   771 KYKIDRARADENQLTPVSKGAY 792

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cherNP_001262659.2 CH_dFLNA-like_rpt1 175..297 CDD:409160 56/126 (44%)
CH_dFLNA-like_rpt2 298..415 CDD:409164 33/121 (27%)
IG_FLMN 432..527 CDD:214720 22/129 (17%)
IG_FLMN 532..627 CDD:214720 27/122 (22%)
IG_FLMN 631..724 CDD:214720 23/95 (24%)
IG_FLMN 728..815 CDD:214720
IG_FLMN 821..913 CDD:214720
IG_FLMN 918..1001 CDD:214720
Filamin 1012..1098 CDD:395505
IG_FLMN 1109..1196 CDD:214720
Filamin 1197..1293 CDD:395505
IG_FLMN 1302..1392 CDD:214720
IG_FLMN 1395..1490 CDD:214720
IG_FLMN 1494..1587 CDD:214720
IG_FLMN 1606..1682 CDD:214720
IG_FLMN <1731..1791 CDD:214720
IG_FLMN 1797..1884 CDD:214720
IG_FLMN 1978..2067 CDD:214720
Filamin <2111..2159 CDD:395505
IG_FLMN 2172..2260 CDD:214720
IG_FLMN 2265..2354 CDD:214720
IG_FLMN 2360..2448 CDD:214720
IG_FLMN 2488..2577 CDD:214720
plecaXP_021323777.1 CH_PLEC-like_rpt1 227..336 CDD:409037 52/118 (44%)
CH_PLEC_rpt2 349..454 CDD:409087 29/123 (24%)
SPEC 724..818 CDD:197544 16/69 (23%)
SPEC 819..1009 CDD:238103
SH3_10 995..1061 CDD:407754
Spectrin_like 1096..1173 CDD:465730
CCDC158 <1240..>1774 CDD:464943
Smc <1527..>2103 CDD:440809
PTZ00121 <1979..2824 CDD:173412
Plectin 2938..2976 CDD:459901
PLEC 2974..3011 CDD:197605
Plectin 3014..3052 CDD:459901
Plectin 3265..3303 CDD:459901
PLEC 3302..3338 CDD:197605
Plectin 3341..3379 CDD:459901
Plectin 3554..3592 CDD:459901
Plectin 3592..3630 CDD:459901
PLEC 3629..3665 CDD:197605
Plectin 3668..3704 CDD:459901
Plectin 3925..3963 CDD:459901
Plectin 4001..4039 CDD:459901
Plectin 4130..4168 CDD:459901
Plectin 4168..4206 CDD:459901
PLEC 4205..4236 CDD:197605
Plectin 4244..4282 CDD:459901
Plectin <4345..4373 CDD:459901
PLEC 4478..4511 CDD:197605
Plectin 4514..4552 CDD:459901
Plectin 4590..4628 CDD:459901
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.