DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cher and atn-1

DIOPT Version :10

Sequence 1:NP_001262659.2 Gene:cher / 42066 FlyBaseID:FBgn0014141 Length:2577 Species:Drosophila melanogaster
Sequence 2:NP_506127.1 Gene:atn-1 / 179709 WormBaseID:WBGene00000228 Length:920 Species:Caenorhabditis elegans


Alignment Length:305 Identity:97/305 - (31%)
Similarity:160/305 - (52%) Gaps:36/305 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 HQQTNDYYQPARQEGQQADQYEENFDEDMEAERDLAEDAQWKKIQQNTFTRWANEHLKTIDRSIN 210
            :||...|:||    |....|.||.:|      |:...|..|:|.|:.|||.|.|.||:....||:
 Worm     5 YQQPPSYHQP----GYDYTQQEEEWD------REGLLDPAWEKQQKKTFTAWCNSHLRKAGTSID 59

  Fly   211 NLETDLSDGLRLIALIEVLSQKRMPKYNKRPTFRSQKLENVSVALKFLQDEGIKIVNIDSSDIVD 275
            .:|.|..:||:|:.|:||:|.:.:||.: |...|..|:.||:.||::::.:|:|:|:|.:.:|||
 Worm    60 TIEEDFRNGLKLMLLLEVISGEPLPKPD-RGKMRFHKIANVNKALEYIESKGVKLVSIGAEEIVD 123

  Fly   276 CKLKLILGLIWTLILHYSISMPMWDGEDDKQLNGSGHTPKQRLLNWIHAKIP---DLPINNFTND 337
            ..:|:.||||||:||.::|          :.:|....:.:..||.|...|..   ::.:.||.|.
 Worm   124 GNVKMTLGLIWTIILRFAI----------QDINVEELSARDGLLLWCQRKTAPYNNVNVQNFHNS 178

  Fly   338 WTTGKAVGALVDACAPGLCPDWELWDPKDAVQNASEAMGLADDWLNVRQLIKPEELVNPNVDEQS 402
            |..|.|..||:....|.|. |:......|.:.|.:.|..:|:..|::.:::..|: |:.:.||:|
 Worm   179 WKDGLAFCALIHRHRPDLL-DYSQLHKGDPIHNLNLAFDIAEKHLDIPKMLDAED-VSRHPDEKS 241

  Fly   403 MMTYLSQYPNSKLKTGAPLRPKTNPNSIPPPRVRAYGPGIEPIGP 447
            .|||:|.:.::       .|...:|   |||.:|...|....:.|
 Worm   242 TMTYVSCFYHA-------FRNMRDP---PPPVIRQPPPQRVVVAP 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cherNP_001262659.2 CH_dFLNA-like_rpt1 175..297 CDD:409160 49/121 (40%)
CH_dFLNA-like_rpt2 298..415 CDD:409164 30/119 (25%)
IG_FLMN 432..527 CDD:214720 5/16 (31%)
IG_FLMN 532..627 CDD:214720
IG_FLMN 631..724 CDD:214720
IG_FLMN 728..815 CDD:214720
IG_FLMN 821..913 CDD:214720
IG_FLMN 918..1001 CDD:214720
Filamin 1012..1098 CDD:395505
IG_FLMN 1109..1196 CDD:214720
Filamin 1197..1293 CDD:395505
IG_FLMN 1302..1392 CDD:214720
IG_FLMN 1395..1490 CDD:214720
IG_FLMN 1494..1587 CDD:214720
IG_FLMN 1606..1682 CDD:214720
IG_FLMN <1731..1791 CDD:214720
IG_FLMN 1797..1884 CDD:214720
IG_FLMN 1978..2067 CDD:214720
Filamin <2111..2159 CDD:395505
IG_FLMN 2172..2260 CDD:214720
IG_FLMN 2265..2354 CDD:214720
IG_FLMN 2360..2448 CDD:214720
IG_FLMN 2488..2577 CDD:214720
atn-1NP_506127.1 CH_ACTN_rpt1 34..138 CDD:409063 44/104 (42%)
CH_ACTN_rpt2 142..253 CDD:409065 31/129 (24%)
Spectrin 305..414 CDD:395348
SPEC 426..654 CDD:238103
PTZ00184 775..>879 CDD:185504
EFhand_Ca_insen 853..919 CDD:430177
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.