DRSC/TRiP Functional Genomics Resources

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Protein Alignment cher and sptbn2

DIOPT Version :10

Sequence 1:NP_001262659.2 Gene:cher / 42066 FlyBaseID:FBgn0014141 Length:2577 Species:Drosophila melanogaster
Sequence 2:XP_012817859.1 Gene:sptbn2 / 100486199 XenbaseID:XB-GENE-1008690 Length:2437 Species:Xenopus tropicalis


Alignment Length:264 Identity:91/264 - (34%)
Similarity:144/264 - (54%) Gaps:26/264 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 QQADQYEENFDEDMEAERDLAEDAQWKKIQQNTFTRWANEHLKTIDRSINNLETDLSDGLRLIAL 225
            |.|:..|..| :.::.||:        .:|:.|||:|.|.||..:...|::|..||.||..||.|
 Frog    75 QYANVLEGRF-KQLQDERE--------AVQKKTFTKWVNSHLARVTCRISDLYNDLRDGRMLIRL 130

  Fly   226 IEVLSQKRMPKYNKRPT---FRSQKLENVSVALKFLQDEGIKIVNIDSSDIVDCKLKLILGLIWT 287
            :||||.:::||    ||   .|...||||..||:||:::.:.:.|:.|.||||...:|.||||||
 Frog   131 LEVLSGEQLPK----PTKGRMRIHCLENVDKALQFLKEQKVHLENMGSHDIVDGNHRLTLGLIWT 191

  Fly   288 LILHYSISMPMWDGEDDKQLNGSGHTPKQRLLNWIHAK---IPDLPINNFTNDWTTGKAVGALVD 349
            :||.:.|.....:.||:|:...:    |..||.|...|   .|::.::|||..|..|.|..|:|.
 Frog   192 IILRFQIQDISVETEDNKEKKSA----KDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVH 252

  Fly   350 ACAPGLCPDWELWDPKDAVQNASEAMGLADDWLNVRQLIKPEELVNPNVDEQSMMTYLSQYPN-- 412
            ...|.:. |::.....:|..|...|..:|:..|.:.:|:.||::.....||:|::||::.:.:  
 Frog   253 KHRPDII-DFDTLKKSNAHHNLQNAFNVAERELGLTKLLDPEDVNVDQPDEKSIITYVATFYHYF 316

  Fly   413 SKLK 416
            ||:|
 Frog   317 SKMK 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cherNP_001262659.2 CH_dFLNA-like_rpt1 175..297 CDD:409160 52/124 (42%)
CH_dFLNA-like_rpt2 298..415 CDD:409164 33/121 (27%)
IG_FLMN 432..527 CDD:214720
IG_FLMN 532..627 CDD:214720
IG_FLMN 631..724 CDD:214720
IG_FLMN 728..815 CDD:214720
IG_FLMN 821..913 CDD:214720
IG_FLMN 918..1001 CDD:214720
Filamin 1012..1098 CDD:395505
IG_FLMN 1109..1196 CDD:214720
Filamin 1197..1293 CDD:395505
IG_FLMN 1302..1392 CDD:214720
IG_FLMN 1395..1490 CDD:214720
IG_FLMN 1494..1587 CDD:214720
IG_FLMN 1606..1682 CDD:214720
IG_FLMN <1731..1791 CDD:214720
IG_FLMN 1797..1884 CDD:214720
IG_FLMN 1978..2067 CDD:214720
Filamin <2111..2159 CDD:395505
IG_FLMN 2172..2260 CDD:214720
IG_FLMN 2265..2354 CDD:214720
IG_FLMN 2360..2448 CDD:214720
IG_FLMN 2488..2577 CDD:214720
sptbn2XP_012817859.1 CH_SPTBN2_rpt1 28..195 CDD:409166 54/132 (41%)
CH_SPTBN2_rpt2 209..327 CDD:409170 33/117 (28%)
Spectrin 341..451 CDD:395348
SPEC 465..563 CDD:197544
SPEC 568..783 CDD:238103
SPEC 681..888 CDD:238103
SPEC 785..994 CDD:238103
SPEC 997..1206 CDD:238103
SPEC 1210..1419 CDD:238103
SPEC 1420..1630 CDD:238103
SPEC 1527..1734 CDD:238103
SPEC 1632..1843 CDD:238103
SPEC 1844..2051 CDD:238103
SPEC 2060..>2117 CDD:197544
PH_beta_spectrin 2272..2377 CDD:269975
Blue background indicates that the domain is not in the aligned region.

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