DRSC/TRiP Functional Genomics Resources

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Protein Alignment cher and dst

DIOPT Version :10

Sequence 1:NP_001262659.2 Gene:cher / 42066 FlyBaseID:FBgn0014141 Length:2577 Species:Drosophila melanogaster
Sequence 2:XP_073776543.1 Gene:dst / 100333215 ZFINID:ZDB-GENE-030131-3399 Length:8238 Species:Danio rerio


Alignment Length:454 Identity:123/454 - (27%)
Similarity:189/454 - (41%) Gaps:130/454 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 ERDLAEDAQWKKIQQNTFTRWANEHLKTIDRSINNLETDLSDGLRLIALIEVLSQKRMPKY---- 237
            |||        ::|:.|||:|.|:||..:.:.:|:|..||.||..||:|:||||.:.:|:.    
Zfish   203 ERD--------RVQKKTFTKWINQHLLKVRKHVNDLYEDLRDGHNLISLLEVLSGETLPRERDLL 259

  Fly   238 ------NKRPTFRSQKLENVSVALKFLQDEGIKIVNIDSSDIVDCKLKLILGLIWTLILHYSISM 296
                  .::...|..:|:||.:||.:|:...:|:|||.:.||.|...||.||||||:|||:.||.
Zfish   260 KTLRLPREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQISE 324

  Fly   297 PMWDGEDDKQLNGSGHTPKQRLLNW---IHAKIPDLPINNFTNDWTTGKAVGALVDACAPGLCPD 358
            ....||.:..      |.|:|||.|   :......:..:|||..|..|:...|::....|.|. |
Zfish   325 IHVTGESEDM------TAKERLLLWSKQMTEGYVGVRCDNFTTSWRDGRLFNAIIHKYRPDLV-D 382

  Fly   359 WELWDPKDAVQNASEAMGLADDWLNVRQLIKPEELVNPNVDEQSMMTYLSQYPNSKLKTGAPLRP 423
            ......:.:..|..:|.|:|:. |.|.:|:.||::...:.||:|::||:|...:..         
Zfish   383 MSRVSAQTSRSNLEQAFGVAEQ-LGVARLLDPEDVDVSSPDEKSVITYVSTLYDVF--------- 437

  Fly   424 KTNPNSIPPPRVRAYGPGIEPIGPVVGAPANFTVETFSAGKGSVDVDIQGPNGEIEKADVRFNND 488
                     |:|...|.||.         ||             |||::.         |.:.|.
Zfish   438 ---------PKVPEGGDGIN---------AN-------------DVDVKW---------VEYQNM 462

  Fly   489 KNLTYTVSYIPKSEGSHKVAVKFSGRDIPKSPFPVK-------------VEGHAGDASKVK---- 536
            .|  |...:|     .|.|.| .|.|..|.||..:|             :.....:.||:|    
Zfish   463 VN--YLSQWI-----KHNVTV-MSDRHFPSSPVELKALYTQYLHFKENEIPPKENEKSKIKHLYK 519

  Fly   537 -----------VTGPGIQPNGVTIKKPTFFDILAKDAGRGVPEVIIIDPANHKTSVAAKVRQLE 589
                       ...||..||.|           .|:.|:     :|:.....:.|:..:|.:||
Zfish   520 MLEIWIEFGRVQLPPGFHPNDV-----------EKEWGK-----LIVAMLEREKSLRPEVDRLE 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cherNP_001262659.2 CH_dFLNA-like_rpt1 175..297 CDD:409160 52/129 (40%)
CH_dFLNA-like_rpt2 298..415 CDD:409164 32/119 (27%)
IG_FLMN 432..527 CDD:214720 24/107 (22%)
IG_FLMN 532..627 CDD:214720 15/73 (21%)
IG_FLMN 631..724 CDD:214720
IG_FLMN 728..815 CDD:214720
IG_FLMN 821..913 CDD:214720
IG_FLMN 918..1001 CDD:214720
Filamin 1012..1098 CDD:395505
IG_FLMN 1109..1196 CDD:214720
Filamin 1197..1293 CDD:395505
IG_FLMN 1302..1392 CDD:214720
IG_FLMN 1395..1490 CDD:214720
IG_FLMN 1494..1587 CDD:214720
IG_FLMN 1606..1682 CDD:214720
IG_FLMN <1731..1791 CDD:214720
IG_FLMN 1797..1884 CDD:214720
IG_FLMN 1978..2067 CDD:214720
Filamin <2111..2159 CDD:395505
IG_FLMN 2172..2260 CDD:214720
IG_FLMN 2265..2354 CDD:214720
IG_FLMN 2360..2448 CDD:214720
IG_FLMN 2488..2577 CDD:214720
dstXP_073776543.1 None
Blue background indicates that the domain is not in the aligned region.

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