DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ns1 and GEP3

DIOPT Version :9

Sequence 1:NP_732199.2 Gene:Ns1 / 42060 FlyBaseID:FBgn0038473 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_014848.1 Gene:GEP3 / 854380 SGDID:S000005731 Length:556 Species:Saccharomyces cerevisiae


Alignment Length:580 Identity:111/580 - (19%)
Similarity:193/580 - (33%) Gaps:218/580 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 QDQDEKKYKNAVTKEQSLKQY-----FKEFRKVIENADVVL-EVVDARDP-LGTRCNEVERAVRG 177
            ||||..| ....||.:||...     .::.:.::.:.|:.| :.....|| |.|:.:.:.|.:  
Yeast    32 QDQDPSK-PGYYTKPKSLPDSKLNPDLQDLKYLLFSQDIQLSKQATQNDPDLKTKRDLLLRVI-- 93

  Fly   178 APGNKRLVLVLNKADLVPRE----NLNNWIKYFRRSG------PVTAFKASTQDQANRLGRRKL- 231
               .||....|:..:..|.|    .||:.:.|..|..      |...|....  ..|.|.|..| 
Yeast    94 ---CKRCSNALHHNNYNPEEFPESTLNDILNYVPRGSNVMHIVPFVEFPLHL--DPNVLKRNDLD 153

  Fly   232 ---------REMKTEKAMQGSVCIGAELLM----------------------SMLGNYCRNKGIK 265
                     :..|.:.|:...|.|..:..:                      ||..||.:|    
Yeast   154 TTLVLTKSDQVFKDKNAVSKKVPIFMKQFLKNTLRIDSNKTFAISALKNWNISMFYNYFKN---- 214

  Fly   266 TSIRVGVVGIPNVGKSSIINSLTR---GRSCMVGST----------------------------- 298
               ...::|.||||||::||:|.:   |....:.||                             
Yeast   215 ---YTYLLGNPNVGKSTLINTLLQKYLGYKVKIDSTGKINSPSEEVMQEAFTNPKNFFKIQAAGV 276

  Fly   299 ---PGVTKSMQEVELDSKIKLIDCPGIVFTSGGENSHAVLKNAQRVGDVKDPFTIAESVLKRASK 360
               |.:|:|:|..::..|| |.|.||          ::...:..|:.::.|     |..|:|..|
Yeast   277 SHIPNLTRSVQAYQVGGKI-LFDLPG----------YSTSTSRLRLEELID-----ERWLQRLRK 325

  Fly   361 EYFCTMYDITN-----YDTFEEFFAKKAARMGKFLKKGVPDVVAAARSVLNDWNTGKIKYCTQPP 420
            .      |:.|     ..|:|..  |..::.|.:...|:..:|....|:     ...:||...|.
Yeast   326 T------DLFNRKHIKQKTYESM--KGTSQGGCYTVGGIFYLVPPKGSI-----NQIVKYIPGPS 377

  Fly   421 E----VQEGQSVHISASIVHSEAREFDVENFESMETEILEHCAVKT------------------- 462
            :    :::|..|             |:..|..|....:..:|.:|:                   
Yeast   378 KTFKNIEKGIDV-------------FNSCNSSSGTHPLSRYCGIKSVICEKSQYKRYAIPPFIGS 429

  Fly   463 -----DDI--MEITSTGPLE----------------IRQP-----------------REEAEPAD 487
                 .||  :.:.:||..|                ||:|                 :|.:.|.|
Yeast   430 IEIVLKDIGYILLRTTGRYEFKGLHEIWIPRGIQVGIREPLENLIESGYQRYIETNGKESSCPRD 494

  Fly   488 K-ITASL---VIDEKEKPAKGRKRKLDEEKEKVDPSLLLEENQSLNKGIKQMQKLKKKQN 543
            : |.:||   ..||.:.....:|..|::.::.:.....::::.     ...:|.|:||:|
Yeast   495 RPIISSLYEMAPDEADTLNAVKKSYLEKTEKDLSARRFVDDDP-----YDLVQHLEKKKN 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns1NP_732199.2 GN3L_Grn1 17..88 CDD:285863
SurA_N_3 59..>150 CDD:304439 9/34 (26%)
RbgA 121..443 CDD:224083 82/414 (20%)
Nucleostemin_like 152..322 CDD:206753 53/248 (21%)
Ras_like_GTPase 271..>400 CDD:206648 37/168 (22%)
GEP3NP_014848.1 YqeH 94..302 CDD:206748 47/227 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1161
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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