DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ns1 and Ns3

DIOPT Version :9

Sequence 1:NP_732199.2 Gene:Ns1 / 42060 FlyBaseID:FBgn0038473 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_001284779.1 Gene:Ns3 / 31097 FlyBaseID:FBgn0266284 Length:606 Species:Drosophila melanogaster


Alignment Length:608 Identity:139/608 - (22%)
Similarity:238/608 - (39%) Gaps:160/608 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 ERRAAKKNPKKGSKKQKLIQIPNICPFKDDILKEVEEAKQRQEAERLARREAFKAEREQNKFKTL 97
            |.:|.|.|....:.||::           .:|.:.:|.:..|:.:.  .|:..|..|...  .|.
  Fly    73 EFQAEKLNITFVNPKQRV-----------GLLSKTQEQRMHQKHDE--HRDQLKIPRRPK--WTK 122

  Fly    98 ESMVEDADMRSTVHGIMHENDA-----------QDQDEKKYKNAVTKEQSLKQYFKEFRKVIENA 151
            |:..|:.        :..||:|           |:.:|    ..:|..:...:::::..:|:|.:
  Fly   123 ETSAEEL--------VRAENEAFLDWRRDLALLQEDEE----ILMTPYEKNLEFWRQLWRVVERS 175

  Fly   152 DVVLEVVDARDPLGTRCNEVERAVRGAPGNKRLVLVLNKADLVPRENLNNWIKYFRRSGPVTAFK 216
            |||:::||||:||..|..::||.|:....:|..::::||:||:..|...:|.:||...|..|||.
  Fly   176 DVVVQIVDARNPLLFRSADLERYVKEVEPSKMNMILVNKSDLLTEEQRRHWAEYFDSEGIRTAFY 240

  Fly   217 AST--QDQANRLG-------------RRKLREMK-----TEKAM--------------------- 240
            ::|  :::..|..             ||.:.|:|     .|.|:                     
  Fly   241 SATLVEEELKREAEECLDSFPEVQQLRRAVEEIKQSLDSVEDALNVIEQKYKTIPETQNDELPRL 305

  Fly   241 ---QGSVCIGAEL-LMSMLGN-YCRNKGIKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPG 300
               :.|..:.:.| |:..|.| |...:..:..:.||:||.|||||||.||||...:...|.:|||
  Fly   306 PGDKNSPRLLSRLELIEFLRNIYTGPRHTEQHVTVGMVGYPNVGKSSTINSLMTVKKVSVSATPG 370

  Fly   301 VTKSMQEVELDSKIKLIDCPGIVFTSGGENSHAVLKNAQR-------VGDVKDPFTIAESVLKRA 358
            .||..|.:.||..|.|.||||:|..|      .||..|..       :..::|.......:.:|.
  Fly   371 KTKRFQTLFLDKDILLCDCPGLVMPS------FVLTKADMLLNGILPIDQMRDHVPAVNLLCERI 429

  Fly   359 SKEYFCTMY-----------DITNYDTFEEFFAKKAARMGKFLKKGVPDVVAAARSVLNDWNTGK 412
            .:......|           |:......||.........|.....|.||...:||.||.|:..|:
  Fly   430 PRHVLEDKYGIVIAKPLEGEDMERPPHSEELLLAYGYNRGFMTSNGQPDQARSARYVLKDYVNGR 494

  Fly   413 IKYCTQPPEVQEGQSVHISASIVHSEAREFDVENFESMETEILEHCAVKTDDIMEITSTGPLEIR 477
            :.|...||.|.                 :.:...|...:..::|..                ::.
  Fly   495 LLYAMSPPSVP-----------------QTEYHTFPERQRRVIEES----------------QLP 526

  Fly   478 QPREEAEPADKITASLVIDE--KEKP----AKGRKRKLDEEKEKVDPSLLLEENQSLNKG----I 532
            ..::.|...:|.|:..:.::  .:||    .|||..         .|::.|..:.||..|    .
  Fly   527 GQQQRAMRINKSTSKELDNQFFSDKPTHAHVKGRTN---------FPNVRLANDGSLVAGNDPAA 582

  Fly   533 KQMQKLKKKQNVRNEKKISKITD 555
            |..:.:||::..:..||.|.:.:
  Fly   583 KPWRHVKKERREKLRKKFSHLDE 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns1NP_732199.2 GN3L_Grn1 17..88 CDD:285863 11/54 (20%)
SurA_N_3 59..>150 CDD:304439 16/101 (16%)
RbgA 121..443 CDD:224083 99/385 (26%)
Nucleostemin_like 152..322 CDD:206753 69/215 (32%)
Ras_like_GTPase 271..>400 CDD:206648 44/146 (30%)
Ns3NP_001284779.1 RbgA 161..524 CDD:224083 99/401 (25%)
HSR1_MMR1 164..395 CDD:206750 73/230 (32%)
p10 <270..312 CDD:177631 4/41 (10%)
P-loop_NTPase 313..>357 CDD:304359 18/43 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45435327
Domainoid 1 1.000 42 1.000 Domainoid score I753
eggNOG 1 0.900 - - E1_COG1161
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.740

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