DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ns1 and Lsg1

DIOPT Version :9

Sequence 1:NP_732199.2 Gene:Ns1 / 42060 FlyBaseID:FBgn0038473 Length:581 Species:Drosophila melanogaster
Sequence 2:XP_036015788.1 Gene:Lsg1 / 224092 MGIID:107236 Length:650 Species:Mus musculus


Alignment Length:672 Identity:139/672 - (20%)
Similarity:227/672 - (33%) Gaps:252/672 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 TGRLKHKIEKKVRDHNKKERRAAKKNPKKGSKKQKLIQIPNICPFKD------DILKEVEEAKQR 73
            ||.|..:..::::..:::.|              :.:.||.  .|.|      |.....||.||.
Mouse    89 TGLLSFEESQRIKKLHEENR--------------QFLCIPR--SFYDCFRPNWDRKTSPEELKQA 137

  Fly    74 QEAERLA-RREAFKAEREQNKFKTLESMVEDADMRSTVHGIMHENDAQDQDEKKYKNAVTKEQSL 137
            ::...|. ||:..:.|.||                                    |..:|..:..
Mouse   138 EKDNFLKWRRQLVRLEEEQ------------------------------------KLILTPFERN 166

  Fly   138 KQYFKEFRKVIENADVVLEVVDARDPLGTRCNEVERAVRGAPGNKRLVLVLNKADLVPRENLNNW 202
            ..::::..:|||.:|:|:::||||:||..||.::|..|:.....|..|:::|||||:..|....|
Mouse   167 LDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKEIDAAKENVILINKADLLTAEQRFAW 231

  Fly   203 IKYFRRSGPVTAF------------------------------KASTQDQANRLGRRKLREMKTE 237
            ..:|.:.|....|                              ::|:.| ||.:..|.|..:..|
Mouse   232 AVHFEKEGVKVIFWSALAETDHLNGDLKEEVDSVAGDTNKTESESSSLD-ANEIPHRDLISLSEE 295

  Fly   238 KAMQG----------------------------------------------------SVCIGAEL 250
            .|...                                                    |..:..:.
Mouse   296 SASDSGDSKYEDCQEDEEEDWQTCSEEDSVPEEEEGCNADSETQNRKNAENQQVNNDSYLVSKQE 360

  Fly   251 LMSMLGNYCRNKGIKT-SIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKSMQEVELDSKI 314
            |:.:.......|.:|. .:.||:||.|||||||.||::...:...|.:|||.||..|.:.::..:
Mouse   361 LLELFKKLHTGKKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHFQTLYVEPGL 425

  Fly   315 KLIDCPGIVFTSGGENSHAVLKNA----------------------QRVGDVKDPFTIAESVLKR 357
            .|.||||:|..|.......::.|.                      :||.:|    |...:::|.
Mouse   426 CLCDCPGLVMPSFVSTKAEMICNGILPIDQMRDHVPPVSLVCQNIPRRVLEV----TYGINIIKP 486

  Fly   358 ASKEYFCTMYDITNYDTFEEFFAKKAARMGKFLKKGVPDVVAAARSVLNDWNTGKIKYCTQPPEV 422
            ...|      |.....|.||.........|.....|.||...:||.:|.|:..||:.||..||  
Mouse   487 REDE------DPYRPPTSEELLTAYGCMRGFMTAHGQPDQPRSARYILKDYVGGKLLYCHPPP-- 543

  Fly   423 QEGQSVHISASIVHSEAREFDVENFESMETEILEHCAVKTDDIMEITSTGPLEIRQPREEAEPAD 487
              |:                |...|:....::|| ..||..::                      
Mouse   544 --GK----------------DPVAFQHQHQQLLE-SKVKGGEL---------------------- 567

  Fly   488 KITASLVIDEKEKPAKGRKRKLDEEKEKVDPSLLLEEN-QSLNKGIKQMQKLK------------ 539
                      :.:|.||||.|  :.:..||.:...:|| ::|.||::.:...|            
Mouse   568 ----------RLQPGKGRKAK--QIENVVDKTFFHQENVRALTKGVQAVMGYKPGHGLVTAAAAS 620

  Fly   540 ---------KKQNVRNEKKISK 552
                     ||...||:|:.|:
Mouse   621 AENVPGKPWKKHGNRNKKEKSR 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns1NP_732199.2 GN3L_Grn1 17..88 CDD:285863 14/77 (18%)
SurA_N_3 59..>150 CDD:304439 17/97 (18%)
RbgA 121..443 CDD:224083 94/426 (22%)
Nucleostemin_like 152..322 CDD:206753 60/252 (24%)
Ras_like_GTPase 271..>400 CDD:206648 41/150 (27%)
Lsg1XP_036015788.1 RbgA 157..546 CDD:224083 94/419 (22%)
HSR1_MMR1 169..436 CDD:206750 65/267 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1161
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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