DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ns1 and Gnl3l

DIOPT Version :9

Sequence 1:NP_732199.2 Gene:Ns1 / 42060 FlyBaseID:FBgn0038473 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_001075427.1 Gene:Gnl3l / 100034253 RGDID:1600217 Length:577 Species:Rattus norvegicus


Alignment Length:593 Identity:219/593 - (36%)
Similarity:312/593 - (52%) Gaps:82/593 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 RLKHKIEKKVRDHNKKERRAAKKNPKKGSKKQKLIQIPNICPFKDDILKEVEEAKQRQEAERLAR 81
            :|:|| .||....:|..::.|::|.||.:.:..  ..|.|....|...:|.|..|:|  .|.:..
  Rat     3 KLRHK-NKKPGKGSKGCKKPARQNGKKVTSRPS--SAPQIVHGNDHASREAELKKKR--VEEMRE 62

  Fly    82 REAFKAEREQNKFKTLESMVEDADMRSTVHGIMHENDAQDQDEKKYKNAVTKEQSL--------- 137
            ::....|:|:.:.:|:||..:|...|              |.|.:.|..|.:|.::         
  Rat    63 KQQVAREQERQRHRTMESYCQDVLKR--------------QQEFEQKEEVLQELNMFPQLDDEAT 113

  Fly   138 -KQYFKEFRKVIENADVVLEVVDARDPLGTRCNEVERAVRGAPGNKRLVLVLNKADLVPRENLNN 201
             |.|:||||||:|.:||:|||:|||||||.||.::|..|..|.|||:|||||||.||||:|.:..
  Rat   114 RKAYYKEFRKVVEYSDVILEVLDARDPLGCRCFQMEETVLRAEGNKKLVLVLNKIDLVPKEIVEK 178

  Fly   202 WIKYFRRSGPVTAFKASTQ-DQANRLGRRKLR-EMKTEKAMQGSVCIGAELLMSMLGNYCRNKGI 264
            |::|.|...|..||||||| .|...|.|.|:. :..:|..::...|.|||.||.:||||||...|
  Rat   179 WLEYLRNELPTVAFKASTQHHQVKNLTRCKVPVDQASESLLKSKACFGAENLMRVLGNYCRLGEI 243

  Fly   265 KTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPGVTKSMQEVELDSKIKLIDCPGIVFTSGGE 329
            :..|||||||:|||||||:||||.|.|:|.||:.|||||.||||.||..|:|:|.||||   .|.
  Rat   244 RGHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLDKFIRLLDAPGIV---AGP 305

  Fly   330 NSH--AVLKNAQRVGDVKDPFTIAESVLKRASKEYFCTMYDITNYDTFEEFFAKKAARMGKFLKK 392
            ||.  .:|:|...|..:.||.|..|::|:|.:.|.....|.::.:.|.|.|....|.|:||..|.
  Rat   306 NSEVGTILRNCIHVQKLADPVTPVETILQRCNLEEISNYYGVSGFQTTEHFLTAVAHRLGKKKKG 370

  Fly   393 GVPDVVAAARSVLNDWNTGKIKYCTQPPEVQEGQSVHISASIVHSEAREFDVENFESMETEILEH 457
            ||.....||::||.||.:|||.:.|.||.... ...|:||.||......||:|:.|....:.:|.
  Rat   371 GVYSQEQAAKAVLADWVSGKISFYTPPPPTHT-LPTHLSAEIVKEMTEVFDIEDTEQANEDTMEC 434

  Fly   458 CAV-KTDDIMEITSTGPLEIRQPREEAEPADKITASLVIDEK-------------EKPAKGR--- 505
            .|| ::|:::.......:|:|...   .|..||..:  |:.|             .||.:.:   
  Rat   435 LAVGESDELLGDMDPQEMEVRWLH---SPLVKIADA--IENKTTVYKIGNLTGYCTKPNRHQMGW 494

  Fly   506 -KRKLDE---------EKEKVD--PSLL-------LEENQSLNKGIKQMQKLKKKQNVRNEKKIS 551
             ||.:|.         |...||  |.|.       |::.|:|...:|..:||:|    |::|..:
  Rat   495 PKRNVDHHCPQNNRVVEVSSVDRRPMLQRILETDPLQQGQALASALKNKKKLQK----RSDKIAT 555

  Fly   552 KITDVLDS 559
            |::|.:.|
  Rat   556 KLSDSMMS 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns1NP_732199.2 GN3L_Grn1 17..88 CDD:285863 18/70 (26%)
SurA_N_3 59..>150 CDD:304439 26/100 (26%)
RbgA 121..443 CDD:224083 157/335 (47%)
Nucleostemin_like 152..322 CDD:206753 99/171 (58%)
Ras_like_GTPase 271..>400 CDD:206648 62/130 (48%)
Gnl3lNP_001075427.1 GTPase_YlqF 119..391 CDD:274669 140/274 (51%)
Nucleostemin_like 129..301 CDD:206753 99/171 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 136 1.000 Domainoid score I4812
eggNOG 1 0.900 - - E1_COG1161
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 305 1.000 Inparanoid score I2561
OMA 1 1.010 - - QHG48761
OrthoDB 1 1.010 - - D1210675at2759
OrthoFinder 1 1.000 - - FOG0002318
OrthoInspector 1 1.000 - - oto95751
orthoMCL 1 0.900 - - OOG6_101399
Panther 1 1.100 - - LDO PTHR11089
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1530
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

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