DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dad and smad3a

DIOPT Version :9

Sequence 1:NP_001369021.1 Gene:Dad / 42059 FlyBaseID:FBgn0020493 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_571646.1 Gene:smad3a / 58092 ZFINID:ZDB-GENE-000509-3 Length:425 Species:Danio rerio


Alignment Length:392 Identity:108/392 - (27%)
Similarity:161/392 - (41%) Gaps:88/392 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 AVKSRLDPPTKT-QRDVVEPTTTTAPTYLQCILIPCKTQTVWE-------PHVTASRLFFWRELW 295
            ||||.:....|| |.|.:|...||.....:||.||.......:       |||...||:.|.:|.
Zfish    33 AVKSLVKKLKKTGQLDELEKAITTQDVNTKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLQ 97

  Fly   296 NAKELKRLPTCPAA----RDCIYMCCNPLHWFR--------ILHQPETESPT--PP---YQRSKM 343
            :..||:.:..|..|    :|  .:|.||.|:.|        :|....||.|:  ||   |..|  
Zfish    98 SHHELRAIELCEFAFHMKKD--EVCVNPYHYQRVETPVLPPVLVPRHTEIPSEFPPLDDYSHS-- 158

  Fly   344 LRLKDADFEEDSQNDAKSAALSTWSAESTSISNIYKPALYESVTTDGKDHNINSQV--------- 399
                   ..|::...|.....|.:..|:       .|..|.|...:..||.:|..:         
Zfish   159 -------IPENTIFPAGIEPQSNYIPET-------PPPGYISEDGETSDHQMNRSMDTGSPNLSP 209

  Fly   400 ----------------------WCQIAYWEMAHRVGEFFHAKTNAVNI--YTDGIVASEVDSMCL 440
                                  ||.|:|:|:..||||.|||...::.:  :||   .|..:..||
Zfish   210 NPVSPAHNNLDLQPVTYCEPAFWCSISYYELNQRVGETFHASQPSLTVDGFTD---PSNSERFCL 271

  Fly   441 RDLTPAGNQIHSVVPKARHTVGLGVTLSLENGDVWIYNRGNTTIFVDSPTLSENLD----RVCKV 501
            ..|:....  ::.|...|..:|.||.|....|:|:.....::.|||.||..::...    .|||:
Zfish   272 GLLSNVNR--NAAVELTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKI 334

  Fly   502 MPGYCLKAFETNR-AELLSMR-DHGHHPMGPVDYF-SIKISFGKGWGRDYKRQDIMGCPCWLEVH 563
            .||..||.|.... |.||:.. :.|...:..:... :|::||.||||.:|:||.:...|||:|:|
Zfish   335 PPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELH 399

  Fly   564 FS 565
            .:
Zfish   400 LN 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DadNP_001369021.1 MH1_SMAD_6_7 197..329 CDD:199813 33/109 (30%)
MH2_I-SMAD 400..565 CDD:199821 58/173 (34%)
smad3aNP_571646.1 MH1_SMAD_2_3 7..131 CDD:199815 32/99 (32%)
MH2_SMAD_2_3 224..414 CDD:199826 58/183 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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