DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dad and smad10a

DIOPT Version :9

Sequence 1:NP_001369021.1 Gene:Dad / 42059 FlyBaseID:FBgn0020493 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_001352568.1 Gene:smad10a / 560317 ZFINID:ZDB-GENE-060503-248 Length:581 Species:Danio rerio


Alignment Length:599 Identity:128/599 - (21%)
Similarity:183/599 - (30%) Gaps:249/599 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 HPPQTQAQNGKRFREDF-----EALMKQLKRKQRNELLLAVKSRLDPPTKTQRDVVEPTTTTAPT 264
            |......|.|:  .|.|     |:|:|:||.|         |..||       .::...||....
Zfish    17 HSLMCHRQGGE--NEGFAKRAIESLVKKLKEK---------KDELD-------SLITAITTNGVH 63

  Fly   265 YLQCILI----PCKTQTVWE---PHVTASRLFFWRELWNAKELKRLPTCPAARDCIY--MCCNPL 320
            ..:|:.|    ..:.|....   |||..:||:.|.:| :..|||.:..|..|.|..|  :|.||.
Zfish    64 PSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDL-HKNELKHVKFCQYAFDLKYDNVCVNPY 127

  Fly   321 HWFRI---------LHQPETE-------------------------------------------- 332
            |:.|:         |...||.                                            
Zfish   128 HYERVVSPGIVGLSLQNTETHLSSGRCLGPTGRLIKEEYSHDCIQMDVPPGLPPQQDHQGAMKLP 192

  Fly   333 ------SPTPPYQ------------------------RSKMLRLKDADFE--------------- 352
                  .|.||.|                        ...|:.::....|               
Zfish   193 PPDHYGQPLPPLQLPSEGPRAPPPVTLYSNMPLSPTASGSMMPMQGGHGEGLLQIASPQGQVMTP 257

  Fly   353 -----------------------EDSQNDAKSAAL-----STWSAESTSISNIYKPALYESVTTD 389
                                   ::..|.:|.:..     :||:..||:   .|.|.   ....:
Zfish   258 TPPPSTPTHGPPQTPVPPQPPPNQNGYNSSKHSQTQGSFHTTWTGSSTA---SYTPV---GPQQN 316

  Fly   390 GKDH-------------------------NINSQVWCQIAYWEMAHRVGEFFHAKTNAVNIYTDG 429
            |:.|                         :...:.||.|:|:||..:|||.|...::...:..||
Zfish   317 GRGHQPPLHHPHFWSQHHSSASFPPPVSNHPGPEFWCSISYFEMDVQVGEMFKVLSSCPVVTIDG 381

  Fly   430 IV-ASEVDSMCLRDLTPAGNQIH--SVVPKARHTVGLGVTLSLE-NGDVWIYNRGNTTIFVDSPT 490
            .| .|..|..||..|    :.:|  ....:||..:|.||.|... .||||:....:..:||.|..
Zfish   382 YVDPSGGDRFCLGQL----SNVHRTDASERARLHIGKGVQLECRGEGDVWMRCMSDHAVFVQSYY 442

  Fly   491 LSENL-----DRVCKVMPGYCLKAFETNR---------------AELLSMRDHGHHPMGP----- 530
            |....     |.|.|:.||..:|.|:..:               |...:....|:.| ||     
Zfish   443 LDREAGRAPGDAVHKIYPGAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIP-GPGSVGG 506

  Fly   531 --------------VDYFS----IKISFGKGWGRDYKRQDIMGCPCWLEVHFSHLRXQYLMLARS 577
                          ||...    :::||.||||.||.||.|...|||:|||. |...|.|.....
Zfish   507 IAPAVSLSAAAGIGVDDLRRLCILRLSFVKGWGPDYPRQSIKHTPCWVEVHL-HRALQLLDEVLH 570

  Fly   578 AGPHSASQHLVEPG 591
            ..|      |.:||
Zfish   571 TMP------LADPG 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DadNP_001369021.1 MH1_SMAD_6_7 197..329 CDD:199813 39/146 (27%)
MH2_I-SMAD 400..565 CDD:199821 64/211 (30%)
smad10aNP_001352568.1 MH1_SMAD_4 10..134 CDD:199816 38/135 (28%)
MH2_SMAD_4 349..570 CDD:199823 67/226 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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