DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dad and smad1

DIOPT Version :9

Sequence 1:NP_001369021.1 Gene:Dad / 42059 FlyBaseID:FBgn0020493 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_001007481.1 Gene:smad1 / 493211 XenbaseID:XB-GENE-1018193 Length:464 Species:Xenopus tropicalis


Alignment Length:458 Identity:115/458 - (25%)
Similarity:182/458 - (39%) Gaps:131/458 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 EALMKQLKRKQRNELLLAVKSRLDPPTKTQRDVVEPTTTTAPTYLQCILIPCKTQTVWE------ 280
            :||:|:||:|         |..::...|......:|:        .|:.||.......:      
 Frog    35 DALVKKLKKK---------KGAMEELEKALSCPGQPS--------NCVTIPRSLDGRLQVSHRKG 82

  Fly   281 -PHVTASRLFFWRELWNAKELKRLPTC--PAARDCIYMCCNPLHWFRILHQPETESPT-PPY--- 338
             |||...|::.|.:|.:..|||.|..|  |.......:|.||.|:.|:      |||. ||.   
 Frog    83 LPHVIYCRVWRWPDLQSHHELKPLECCEYPFGSKQKEVCINPYHYKRV------ESPVLPPVLVP 141

  Fly   339 -------QRSKMLRLK-----------DADFEEDSQ----------------NDAKSAALSTWSA 369
                   |.|.:.:.:           :|.|.:..|                |...|::....|.
 Frog   142 RHSEYNPQHSLLAQFRNLEPSEPHMPHNATFPDSFQQPNSHPFPHSPNSSYPNSPGSSSTYPHSP 206

  Fly   370 ESTSISNIYK------PALY----ESVTTDGKD--------HNINSQV---------------WC 401
            .|:...:.::      |..|    :.:|.|...        .||...:               ||
 Frog   207 ASSDPGSPFQIPADTPPPAYMPPEDQMTQDNSQPMDTNMMVPNIPQDINRADVQAVAYEEPKHWC 271

  Fly   402 QIAYWEMAHRVGEFFHAKTNAVNI--YTDGIVASEVDSMCLRDLTPAGNQIHSVVPKARHTVGLG 464
            .|.|:|:.:||||.|||.:.:|.:  :||  .::..:..||..|:....  :|.:...|..:|.|
 Frog   272 SIVYYELNNRVGEAFHASSTSVLVDGFTD--PSNNRNRFCLGLLSNVNR--NSTIENTRRHIGKG 332

  Fly   465 VTLSLENGDVWIYNRGNTTIFVDS----------PTLSENLDRVCKVMPGYCLKAFETNR-AELL 518
            |.|....|:|:.....:::|||.|          ||      .|||:..|..||.|.... |:||
 Frog   333 VHLYYVGGEVYAECLSDSSIFVQSRNCNFHHGFHPT------TVCKIPSGCSLKIFNNQEFAQLL 391

  Fly   519 SMR-DHGHHPMGPVDYF-SIKISFGKGWGRDYKRQDIMGCPCWLEVHFSHLRXQYL--MLARSAG 579
            :.. :||...:..:... :|::||.||||.:|.|||:...|||:|:|. |...|:|  :|.:...
 Frog   392 AQSVNHGFETVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHL-HGPLQWLDKVLTQMGS 455

  Fly   580 PHS 582
            ||:
 Frog   456 PHN 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DadNP_001369021.1 MH1_SMAD_6_7 197..329 CDD:199813 29/115 (25%)
MH2_I-SMAD 400..565 CDD:199821 60/179 (34%)
smad1NP_001007481.1 MH1_SMAD_1_5_9 9..132 CDD:199814 29/119 (24%)
FAM70 <132..229 CDD:373433 15/96 (16%)
MH2_SMAD_1_5_9 264..464 CDD:199822 66/206 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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